RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RPUSD3Q6P087 351 aaKnown RBP15.34■□□□□ 0.05
CLN3-246ENST00000636228 CASC4Q6P4E1 433 aa15.34■□□□□ 0.05
CLN3-246ENST00000636228 C4orf22Q6V702 233 aa15.34■□□□□ 0.05
CLN3-246ENST00000636228 GIMAP7Q8NHV1 300 aa15.34■□□□□ 0.05
CLN3-246ENST00000636228 ZNF480Q8WV37 535 aa15.34■□□□□ 0.05
CLN3-246ENST00000636228 TCF12Q99081 682 aa15.34■□□□□ 0.05
CLN3-246ENST00000636228 FBXO6Q9NRD1 293 aaPredicted RBP15.34■□□□□ 0.05
CLN3-246ENST00000636228 PCYOX1Q9UHG3 505 aa15.34■□□□□ 0.05
CLN3-246ENST00000636228 MRPS2Q9Y399 296 aaKnown RBP15.34■□□□□ 0.05
CLN3-246ENST00000636228 CROCCQ5TZA2 2017 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 AP3B1O00203 1094 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 PFDN6O15212 129 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 CEP104O60308 925 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 WDPCPO95876 746 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 SLC16A8O95907 504 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 CATP04040 527 aaKnown RBP15.33■□□□□ 0.04
CLN3-246ENST00000636228 ANXA5P08758 320 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 PRF1P14222 555 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 TPSB2P20231 275 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 OGNP20774 298 aaKnown RBP15.33■□□□□ 0.04
CLN3-246ENST00000636228 CDC25BP30305 580 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 PER3P56645 1201 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 PCOLCEQ15113 449 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 TPSAB1Q15661 275 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 ZNF324BQ6AW86 544 aaPredicted RBP15.33■□□□□ 0.04
CLN3-246ENST00000636228 SP5Q6BEB4 398 aaPredicted RBP15.33■□□□□ 0.04
CLN3-246ENST00000636228 KIAA0930Q6ICG6 404 aaPredicted RBP15.33■□□□□ 0.04
CLN3-246ENST00000636228 ZNF425Q6IV72 752 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 CAND1Q86VP6 1230 aaKnown RBP15.33■□□□□ 0.04
CLN3-246ENST00000636228 CILP2Q8IUL8 1156 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 DENND6AQ8IWF6 608 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 ZC3H7AQ8IWR0 971 aaKnown RBP15.33■□□□□ 0.04
CLN3-246ENST00000636228 ARHGEF39Q8N4T4 335 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 HAS2Q92819 552 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 RERGQ96A58 199 aaPredicted RBP15.33■□□□□ 0.04
CLN3-246ENST00000636228 MACROD1Q9BQ69 325 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.33■□□□□ 0.04
CLN3-246ENST00000636228 FAM114A2Q9NRY5 505 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 MKL2Q9ULH7 1088 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 MED16Q9Y2X0 877 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 CELSR2Q9HCU4 2923 aa15.33■□□□□ 0.04
CLN3-246ENST00000636228 IGHV3-20A0A0C4DH32 117 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 OR2W5A6NFC9 320 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 E7ENX8 843 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 GOLGA8MH3BSY2 632 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 H7BY64 318 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 SMAPO00193 183 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 PRPF4O43172 522 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLN3-246ENST00000636228 BMP10O95393 424 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 STSP08842 583 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 ST13P50502 369 aaKnown RBP15.32■□□□□ 0.04
CLN3-246ENST00000636228 EMP3P54852 163 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 ADARP55265 1226 aaKnown RBP15.32■□□□□ 0.04
CLN3-246ENST00000636228 CDK16Q00536 496 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 TAP2Q03519 686 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 GPS1Q13098 491 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 CTBP1Q13363 440 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 DHX34Q14147 1143 aaKnown RBP15.32■□□□□ 0.04
CLN3-246ENST00000636228 ARHGAP19Q14CB8 494 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 NAA25Q14CX7 972 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 THEMIS2Q5TEJ8 643 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 ZNF470Q6ECI4 717 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 ZNF549Q6P9A3 640 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 CYHR1Q6ZMK1 362 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 PRELID2Q8N945 189 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 OR9A4Q8NGU2 314 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 ZNF669Q96BR6 464 aaPredicted RBP15.32■□□□□ 0.04
CLN3-246ENST00000636228 PRAP1Q96NZ9 151 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 DRC3Q9H069 523 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 MKKSQ9NPJ1 570 aaPredicted RBP15.32■□□□□ 0.04
CLN3-246ENST00000636228 C14orf105Q9NVL8 296 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 ITPR2Q14571 2701 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 ANKRD12Q6UB98 2062 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 MYO9AB2RTY4 2548 aa15.32■□□□□ 0.04
CLN3-246ENST00000636228 MDC1Q14676 2089 aaKnown RBP15.31■□□□□ 0.04
CLN3-246ENST00000636228 TRAV17A0A0B4J275 112 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 CTAGE9A4FU28 777 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 ENO4A6NNW6 628 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 WISP2O76076 250 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 CCNDBP1O95273 360 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 EZRP15311 586 aaKnown RBP15.31■□□□□ 0.04
CLN3-246ENST00000636228 TDGF1P3P51864 188 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 HIBCHQ6NVY1 386 aaPredicted RBP15.31■□□□□ 0.04
CLN3-246ENST00000636228 PRSS41Q7RTY9 318 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 TICAM1Q8IUC6 712 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 LRRC56Q8IYG6 542 aaPredicted RBP15.31■□□□□ 0.04
CLN3-246ENST00000636228 MAIP1Q8WWC4 291 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 ASB11Q8WXH4 323 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 NR4A3Q92570 626 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 MARVELD3Q96A59 401 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 MVB12AQ96EY5 273 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 TGIF2Q9GZN2 237 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 ZNF700Q9H0M5 742 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 RIC8BQ9NVN3 520 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 ZKSCAN5Q9Y2L8 839 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 CENPEQ02224 2701 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 PCM1Q15154 2024 aa15.31■□□□□ 0.04
CLN3-246ENST00000636228 LOC102723996A0A087X1L8 192 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 A0A1B0GUH1 482 aa15.3■□□□□ 0.04
CLN3-246ENST00000636228 A0A1W2PQ72 361 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms