RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PRPS2P11908 318 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 UBE3AQ05086 875 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 SPATS1Q496A3 300 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 CES5AQ6NT32 575 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 ZCCHC8Q6NZY4 707 aaKnown RBP10.27□□□□□ -0.77
CUX1-221ENST00000622516 MICU2Q8IYU8 434 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 DHRSXQ8N5I4 330 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 ARL10Q8N8L6 244 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 MFSD2AQ8NA29 543 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 EZH1Q92800 747 aaPredicted RBP10.27□□□□□ -0.77
CUX1-221ENST00000622516 SMARCD2Q92925 531 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 ITCHQ96J02 903 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 LRIG1Q96JA1 1093 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 VPS35Q96QK1 796 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 KCNH6Q9H252 994 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 DDX18Q9NVP1 670 aaKnown RBP10.27□□□□□ -0.77
CUX1-221ENST00000622516 TMEM45AQ9NWC5 275 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 THG1LQ9NWX6 298 aaKnown RBP10.27□□□□□ -0.77
CUX1-221ENST00000622516 HCN2Q9UL51 889 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 SLC27A6Q9Y2P4 619 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 TDRKHQ9Y2W6 561 aaKnown RBP10.27□□□□□ -0.77
CUX1-221ENST00000622516 GRXCR2A6NFK2 248 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 LATO43561 262 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ASLP04424 464 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 NUDT7P0C024 238 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 TPP2P29144 1249 aaPredicted RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 VAC14Q08AM6 782 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 CNTN1Q12860 1018 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 COL9A2Q14055 689 aaPredicted RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 ELAVL3Q14576 367 aaKnown RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 TCEA2Q15560 299 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 LIPJQ5W064 366 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 TMEM179BQ7Z7N9 219 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 TMEM132CQ8N3T6 1108 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 GOLM1Q8NBJ4 401 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 GLMNQ92990 594 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 CHFRQ96EP1 664 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 FAM83CQ9BQN1 747 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 CPPED1Q9BRF8 314 aaPredicted RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 OR51B5Q9H339 312 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 DYRK4Q9NR20 520 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ASIC5Q9NY37 505 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ALPK3Q96L96 1907 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 GABRR3A8MPY1 467 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 C5orf67F2Z3F1 127 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 LILRB5O75023 590 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 NFATC1O95644 943 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 PCCBP05166 539 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ANXA4P09525 319 aaPredicted RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 NPPBP16860 134 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ENGP17813 658 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 FSHRP23945 695 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ITGB7P26010 798 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 AQP1P29972 269 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 RANBP1P43487 201 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 SOX9P48436 509 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ARSFP54793 590 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 WNT3P56703 355 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ROR2Q01974 943 aaKnown RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 IRAK1BP1Q5VVH5 260 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 C16orf87Q6PH81 154 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 SPESP1Q6UW49 350 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 XKR5Q6UX68 686 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 NEK10Q6ZWH5 1172 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 CHCHD4Q8N4Q1 142 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 OR4K1Q8NGD4 311 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 B4GALNT2Q8NHY0 566 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 PHOSPHO2Q8TCD6 241 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 SUSD6Q92537 303 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 DGCR14Q96DF8 476 aaKnown RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 MUS81Q96NY9 551 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 PLA2G2FQ9BZM2 168 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 RMND5AQ9H871 391 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 GORASP2Q9H8Y8 452 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 CLK4Q9HAZ1 481 aaKnown RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 SH3BP4Q9P0V3 963 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 SLC23A2Q9UGH3 650 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 PCDHGA11Q9Y5H2 935 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 KCNE2Q9Y6J6 123 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 LAMA1P25391 3075 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 A0A096LPI6 279 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 EDDM13A0A1B0GTR0 161 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 H0Y858 1186 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 CLIC1O00299 241 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 DEAF1O75398 565 aaPredicted RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 ERN1O75460 977 aaKnown RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 ELK4P28324 431 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 P2RY2P41231 377 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 RAE1P78406 368 aaKnown RBP10.26□□□□□ -0.77
CUX1-221ENST00000622516 MC1RQ01726 317 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 SMU1Q2TAY7 513 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 EGFLAMQ63HQ2 1017 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 ANGPTL8Q6UXH0 198 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 PRR23BQ6ZRT6 265 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 NLRP8Q86W28 1048 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 RASGRP3Q8IV61 690 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 TERB1Q8NA31 727 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 OR5AR1Q8NGP9 310 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 MAL2Q969L2 176 aa10.26□□□□□ -0.77
CUX1-221ENST00000622516 RPP25Q9BUL9 199 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms