RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ARID2Q68CP9 1835 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 WASH4PA8MWX3 477 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 ADAMDEC1O15204 470 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 TPD52L2O43399 206 aaKnown RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 NDUFB5O43674 189 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 TLL1O43897 1013 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 RETP07949 1114 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 HNF4AP41235 474 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 CDKN2CP42773 168 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 SRSF11Q05519 484 aaKnown RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 MAD2L1BPQ15013 274 aaPredicted RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 ZC3H12BQ5HYM0 836 aaKnown RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 ZNF57Q68EA5 555 aaPredicted RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 USP45Q70EL2 814 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 GALNT7Q86SF2 657 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 FAM83FQ8NEG4 500 aaPredicted RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 RHOXF1Q8NHV9 184 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 GPR62Q9BZJ7 368 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 CTPS2Q9NRF8 586 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 TNFRSF10BO14763 440 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 SOX14O95416 240 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 PEX11BO96011 259 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 CKMT1AP12532 417 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 PSMA1P25786 263 aaKnown RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 SLC6A4P31645 630 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 NNMTP40261 264 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 DAPP51397 102 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 TUBA1BP68363 451 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 VLDLRP98155 873 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 IHHQ14623 411 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 IRAK1BP1Q5VVH5 260 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 C8orf82Q6P1X6 216 aaPredicted RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 TUBA1AQ71U36 451 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 TRNT1Q96Q11 434 aaKnown RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 MGME1Q9BQP7 344 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 TP63Q9H3D4 680 aaPredicted RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 MS4A12Q9NXJ0 267 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 MYO10Q9HD67 2058 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 MTMR11A4FU01 709 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 WNT9AO14904 365 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 UPK1BO75841 260 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 GABARAPO95166 117 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 IGLV3-25P01717 112 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 CATP04040 527 aaKnown RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 GATMP50440 423 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 NFATC2Q13469 925 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 PCBP2Q15366 365 aaKnown RBP eCLIP12.22□□□□□ -0.459e-7■■■■□ 26
LIG1-221ENST00000613670 CATSPEREQ5SY80 951 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 FUT10Q6P4F1 479 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 TRMT11Q7Z4G4 463 aaKnown RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 GPR149Q86SP6 731 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 TSPYL5Q86VY4 417 aaPredicted RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 CNDP2Q96KP4 475 aaKnown RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 PKP4Q99569 1192 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 SLC25A37Q9NYZ2 338 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 VPS29Q9UBQ0 182 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 FAM25AB3EWG3 89 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 FAM25CB3EWG5 89 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 FAM25GB3EWG6 89 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 M0QZQ0 153 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 ZNF865P0CJ78 1059 aaPredicted RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 PRKAG1P54619 331 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 FCGRTP55899 365 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 CLDN8P56748 225 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 CD83Q01151 205 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.22□□□□□ -0.45
LIG1-221ENST00000613670 IFI44LQ53G44 452 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 ADGRF1Q5T601 910 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 ZNF544Q6NX49 715 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 KLHL17Q6TDP4 642 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 PRSS48Q7RTY5 328 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 HJURPQ8NCD3 748 aaPredicted RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 DOK1Q99704 481 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 ACPTQ9BZG2 426 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 CACYBPQ9HB71 228 aaKnown RBP12.22□□□□□ -0.45
LIG1-221ENST00000613670 ANKMY1Q9P2S6 941 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 SSR3Q9UNL2 185 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 DYRK1BQ9Y463 629 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 LTBP3Q9NS15 1303 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 FER1L6Q2WGJ9 1857 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 THSD7AQ9UPZ6 1657 aa12.22□□□□□ -0.45
LIG1-221ENST00000613670 PLK4O00444 970 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 GADD45GO95257 159 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 EIF2S1P05198 315 aaKnown RBP12.21□□□□□ -0.45
LIG1-221ENST00000613670 NSG1P42857 185 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 PPM1FP49593 454 aaPredicted RBP12.21□□□□□ -0.45
LIG1-221ENST00000613670 CLCN4P51793 760 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 ATN1P54259 1190 aaPredicted RBP12.21□□□□□ -0.45
LIG1-221ENST00000613670 ZNF284Q2VY69 593 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 STEAP3Q658P3 488 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 NADSYN1Q6IA69 706 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 LKAAEAR1Q8TD35 194 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 NACC2Q96BF6 587 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 TTYH2Q9BSA4 534 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 MOV10Q9HCE1 1003 aaKnown RBP12.21□□□□□ -0.45
LIG1-221ENST00000613670 PRSS21Q9Y6M0 314 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 MICAL3Q7RTP6 2002 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 KIAA0513O60268 411 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 CAPNS1P04632 268 aa12.21□□□□□ -0.45
LIG1-221ENST00000613670 ITGA2P17301 1181 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms