RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ARF3P61204 181 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 RPS18P62269 152 aaKnown RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 BMPR2Q13873 1038 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 CSHL1Q14406 222 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 NCF4Q15080 339 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 TAF1BQ53T94 588 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 TEX35Q5T0J7 233 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 MROH9Q5TGP6 573 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 FAM198BQ6UWH4 519 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 TTLL10Q6ZVT0 673 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 CCDC91Q7Z6B0 441 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 TBC1D1Q86TI0 1168 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 SYVN1Q86TM6 617 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 ENDOVQ8N8Q3 282 aaKnown RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 LSM14AQ8ND56 463 aaKnown RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 RERGQ96A58 199 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 OR2A5Q96R48 311 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 UNKQ9C0B0 810 aaKnown RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 NDOR1Q9UHB4 597 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 GPN3Q9UHW5 284 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-215ENST00000601150 SH2B3Q9UQQ2 575 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 IKBKGQ9Y6K9 419 aa16.11■□□□□ 0.17
TRIM28-215ENST00000601150 HYKKA2RU49 373 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 INHBAP08476 426 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 SLC26A3P40879 764 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 EMP3P54852 163 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 CSNK1G2P78368 415 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 COL9A2Q14055 689 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-215ENST00000601150 ERV3-1Q14264 604 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 TBR1Q16650 682 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 PRTGQ2VWP7 1150 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 NKAIN1Q4KMZ8 207 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 TRMT10CQ7L0Y3 403 aaKnown RBP16.1■□□□□ 0.17
TRIM28-215ENST00000601150 GPSM1Q86YR5 675 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 CSNK1A1LQ8N752 337 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 SLC44A1Q8WWI5 657 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 EXTL1Q92935 676 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 KIAA1191Q96A73 305 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 OR4K3Q96R72 315 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 DHRS4Q9BTZ2 278 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 NMRAL1Q9HBL8 299 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 IFT80Q9P2H3 777 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-215ENST00000601150 PADI2Q9Y2J8 665 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 ACOT9Q9Y305 439 aa16.1■□□□□ 0.17
TRIM28-215ENST00000601150 A0A087X1B8 175 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 HMX2A2RU54 273 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 CDC14CA4D256 554 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 TXNDC9O14530 226 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 ABHD2P08910 425 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 CD63P08962 238 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 PIM1P11309 404 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-215ENST00000601150 CDH1P12830 882 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 SERPINB9P50453 376 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 PMS2P54278 862 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 RPS15AP62244 130 aaKnown RBP16.09■□□□□ 0.17
TRIM28-215ENST00000601150 TGFBIQ15582 683 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 OR4D1Q15615 310 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 UGT8Q16880 541 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 SOWAHCQ53LP3 525 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-215ENST00000601150 ATP1A1-AS1Q5TC04 95 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 MLIPQ5VWP3 458 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 BORAQ6PGQ7 559 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 PCSK4Q6UW60 755 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 TAOK1Q7L7X3 1001 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 THOC6Q86W42 341 aaKnown RBP16.09■□□□□ 0.17
TRIM28-215ENST00000601150 PLD3Q8IV08 490 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 TCAIMQ8N3R3 496 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 EIF1ADQ8N9N8 165 aaKnown RBP16.09■□□□□ 0.17
TRIM28-215ENST00000601150 ABHD11Q8NFV4 315 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 UHMK1Q8TAS1 419 aaKnown RBP16.09■□□□□ 0.17
TRIM28-215ENST00000601150 PTERQ96BW5 349 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 RHBDF1Q96CC6 855 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 THAP11Q96EK4 314 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 BBC3Q96PG8 261 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-215ENST00000601150 PAFAH2Q99487 392 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 ARHGAP9Q9BRR9 750 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 SYNPO2LQ9H987 977 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 SNX15Q9NRS6 342 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 TLK1Q9UKI8 766 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 TCFL5Q9UL49 500 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 DYRK1BQ9Y463 629 aa16.09■□□□□ 0.17
TRIM28-215ENST00000601150 KCNE1BA0A087WTH5 132 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 POC1B-GALNT4F8VUJ3 575 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 ONECUT2O95948 504 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 FURINP09958 794 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 LTA4HP09960 611 aaKnown RBP16.08■□□□□ 0.16
TRIM28-215ENST00000601150 FAM153BP0C7A2 387 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 ATXN8OSP0DMR3 200 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 GRK3P35626 688 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 GMPRP36959 345 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 MSH2P43246 934 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 SERPINB8P50452 374 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 CCR8P51685 355 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 NFKB2Q00653 900 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 DLG1Q12959 904 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 SLC9A5Q14940 896 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 MUM1Q2TAK8 710 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 DEFB109BQ30KR1 87 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 LINC00303Q3SY05 128 aa16.08■□□□□ 0.16
TRIM28-215ENST00000601150 FAM153CQ494X1 144 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms