RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CENPEQ02224 2701 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 MYO1CO00159 1063 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 SMAPO00193 183 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 PSIP1O75475 530 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 CCNDBP1O95273 360 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 ATP5DP30049 168 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 MAT1AQ00266 395 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 SRSF11Q05519 484 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 GBX1Q14549 363 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 ATG9BQ674R7 924 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 IGFL2Q6UWQ7 119 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 CAND1Q86VP6 1230 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 ZNF480Q8WV37 535 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 FAR1Q8WVX9 515 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 MAGOHBQ96A72 148 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 ALKBH8Q96BT7 664 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 LMF1Q96S06 567 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 UTP6Q9NYH9 597 aaKnown RBP16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 VPS9D1Q9Y2B5 631 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 MAD1L1Q9Y6D9 718 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 UNC79Q9P2D8 2635 aa16.72■□□□□ 0.27
SHKBP1-223ENST00000600552 SCN3AQ9NY46 2000 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 IGKV1-8A0A0C4DH67 115 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 DYTNA2CJ06 578 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 WIPF3A6NGB9 483 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 SDR42E2A6NKP2 422 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 ZNF839A8K0R7 811 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 HAT1O14929 419 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 PRPF4O43172 522 aaKnown RBP eCLIP16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 SLC16A8O95907 504 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 PRR35P0CG20 571 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 COX6A1P12074 109 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 CLCN7P51798 805 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 PRDX1Q06830 199 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 DSG2Q14126 1118 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 TTC27Q6P3X3 843 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 MS4A14Q96JA4 679 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 BARD1Q99728 777 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 C20orf96Q9NUD7 363 aaPredicted RBP16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 OLAHQ9NV23 265 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 INTS10Q9NVR2 710 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 MKL2Q9ULH7 1088 aa16.71■□□□□ 0.27
SHKBP1-223ENST00000600552 H7BY64 318 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 P2RX6O15547 441 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 ZBTB14O43829 449 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 KIF5CO60282 957 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 EDN3P14138 238 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 HSD17B2P37059 387 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 ARHGAP19Q14CB8 494 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 B3GNTL1Q67FW5 361 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 ZNF549Q6P9A3 640 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 UBE2R2Q712K3 238 aaPredicted RBP16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 CPNE9Q8IYJ1 553 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 AMER3Q8N944 861 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 TRIM58Q8NG06 486 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 GIMAP7Q8NHV1 300 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 COG1Q8WTW3 980 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 PRAP1Q96NZ9 151 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 OR2A5Q96R48 311 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 GPR21Q99679 349 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 MACROD1Q9BQ69 325 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 DRC3Q9H069 523 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 ENAMQ9NRM1 1142 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 MRPS2Q9Y399 296 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 CROCCQ5TZA2 2017 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 DOPEY1Q5JWR5 2465 aa16.7■□□□□ 0.26
SHKBP1-223ENST00000600552 IGHV3-20A0A0C4DH32 117 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 FAM237BA0A1B0GVD1 139 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 A8MUI8 341 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 E7ENX8 843 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 E2F3O00716 465 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 FOXS1O43638 330 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 JRKO75564 520 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 SERPINA7P05543 415 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 ERGP11308 486 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 SLC1A2P43004 574 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 AVPR1BP47901 424 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 ADARP55265 1226 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 PER3P56645 1201 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 KCNK10P57789 538 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 MPP1Q00013 466 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 TAP2Q03519 686 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 ZNF425Q6IV72 752 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 PIWIL4Q7Z3Z4 852 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 FJX1Q86VR8 437 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 BCORP1Q8N888 145 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 OR9A4Q8NGU2 314 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 MKKSQ9NPJ1 570 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 C14orf105Q9NVL8 296 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 POLEQ07864 2286 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 CREBBPQ92793 2442 aa16.69■□□□□ 0.26
SHKBP1-223ENST00000600552 IGLV3-12A0A075B6K2 115 aa16.68■□□□□ 0.26
SHKBP1-223ENST00000600552 IGHV1-45A0A0A0MS14 117 aa16.68■□□□□ 0.26
SHKBP1-223ENST00000600552 MAGEB16A2A368 324 aa16.68■□□□□ 0.26
SHKBP1-223ENST00000600552 ZG16O60844 167 aa16.68■□□□□ 0.26
SHKBP1-223ENST00000600552 PHF2O75151 1096 aa16.68■□□□□ 0.26
SHKBP1-223ENST00000600552 ITGAMP11215 1152 aa16.68■□□□□ 0.26
SHKBP1-223ENST00000600552 EZRP15311 586 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-223ENST00000600552 SLC26A3P40879 764 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms