RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 EPHA3P29320 983 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 PIK3CBP42338 1070 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 CSTF3Q12996 717 aaKnown RBP14.67□□□□□ -0.06
TRIM28-209ENST00000597423 MAD2L1Q13257 205 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-209ENST00000597423 ABRAXAS2Q15018 415 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 RBBP5Q15291 538 aaKnown RBP14.67□□□□□ -0.06
TRIM28-209ENST00000597423 SMU1Q2TAY7 513 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 ATP6AP1LQ52LC2 224 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 PLA2G2CQ5R387 149 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 FAM129CQ86XR2 697 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 GATAD2AQ86YP4 633 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 SFTPA2Q8IWL1 248 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 LAS2Q8IYD9 372 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 OR7G3Q8NG95 312 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 MTFMTQ96DP5 389 aaKnown RBP14.67□□□□□ -0.06
TRIM28-209ENST00000597423 ZDHHC12Q96GR4 267 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 PPP1R36Q96LQ0 422 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 OR2A14Q96R47 310 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 EBF4Q9BQW3 602 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 DPH7Q9BTV6 452 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 TBC1D10AQ9BXI6 508 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 TWSG1Q9GZX9 223 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 TUBB1Q9H4B7 451 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 BRF2Q9HAW0 419 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 IL21RQ9HBE5 538 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 FSCN3Q9NQT6 498 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 BTRCQ9Y297 605 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 RNF215Q9Y6U7 377 aa14.67□□□□□ -0.06
TRIM28-209ENST00000597423 ZFC3H1O60293 1989 aaKnown RBP14.67□□□□□ -0.06
TRIM28-209ENST00000597423 TRBC2A0A5B9 178 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 TNFSF14O43557 240 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 PRAMEF4O60810 478 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 PDYNP01213 254 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 SERPINA6P08185 405 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 ZNF806P0C7X5 589 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 GIMD1P0DJR0 217 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 UGT2B7P16662 529 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 TYRP1P17643 537 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 NCF2P19878 526 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-209ENST00000597423 PTX3P26022 381 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-209ENST00000597423 PSMB5P28074 263 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 ALDH4A1P30038 563 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 GPLD1P80108 840 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 RELAQ04206 551 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 LSM12Q3MHD2 195 aaKnown RBP14.66□□□□□ -0.06
TRIM28-209ENST00000597423 SPDYAQ5MJ70 313 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 PRAMEF9Q5VWM5 478 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 SPESP1Q6UW49 350 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 LARP4Q71RC2 724 aaKnown RBP eCLIP14.66□□□□□ -0.06
TRIM28-209ENST00000597423 ZNF438Q7Z4V0 828 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 MTDHQ86UE4 582 aaKnown RBP14.66□□□□□ -0.06
TRIM28-209ENST00000597423 SLC35F3Q8IY50 421 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 MINDY1Q8N5J2 469 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 EID2Q8N6I1 236 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 ATOH1Q92858 354 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-209ENST00000597423 NAT6Q93015 286 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 THAP11Q96EK4 314 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 METTL2AQ96IZ6 378 aaKnown RBP14.66□□□□□ -0.06
TRIM28-209ENST00000597423 TUBB6Q9BUF5 446 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 RAB33BQ9H082 229 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 KCNH6Q9H252 994 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 RHBGQ9H310 441 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 AKTIPQ9H8T0 292 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 AHSPQ9NZD4 102 aa14.66□□□□□ -0.06
TRIM28-209ENST00000597423 A0A0J9YY10 115 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 CCT8L1PA6NM43 557 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 TRIM38O00635 465 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 UBDO15205 165 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 OR1F1O43749 312 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 FOXD2O60548 495 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-209ENST00000597423 RSL1D1O76021 490 aaKnown RBP14.65□□□□□ -0.06
TRIM28-209ENST00000597423 MYO1DO94832 1006 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 CD22P20273 847 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 PEBP1P30086 187 aaKnown RBP14.65□□□□□ -0.06
TRIM28-209ENST00000597423 ADSLP30566 484 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-209ENST00000597423 GRIA3P42263 894 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 NEK2P51955 445 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 RPS15AP62244 130 aaKnown RBP14.65□□□□□ -0.06
TRIM28-209ENST00000597423 CSNK1G2P78368 415 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 REEP5Q00765 189 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 RPS6KA2Q15349 733 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 NR6A1Q15406 480 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 XKR7Q5GH72 579 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 TCHHL1Q5QJ38 904 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-209ENST00000597423 SCIMPQ6UWF3 145 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 TRPM8Q7Z2W7 1104 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 PLXDC1Q8IUK5 500 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 FAM9CQ8IZT9 166 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 CARFQ8N187 725 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 WDR20Q8TBZ3 569 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 APOLD1Q96LR9 279 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 OR52B2Q96RD2 323 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 CD180Q99467 661 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 SERPINI1Q99574 410 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 NRTNQ99748 197 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 CENPKQ9BS16 269 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 SEMA6CQ9H3T2 930 aa14.65□□□□□ -0.06
TRIM28-209ENST00000597423 DNAAF2Q9NVR5 837 aaKnown RBP14.65□□□□□ -0.06
TRIM28-209ENST00000597423 CUEDC1Q9NWM3 386 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-209ENST00000597423 VPS29Q9UBQ0 182 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms