RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CT55Q8WUE5 264 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 RERGQ96A58 199 aaPredicted RBP14.38□□□□□ -0.11
UPF1-202ENST00000594243 RHBDF1Q96CC6 855 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 CCDC77Q9BR77 488 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 TXLNGYQ9BZA5 131 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 CHST8Q9H2A9 424 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 SNX15Q9NRS6 342 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 CUEDC1Q9NWM3 386 aaPredicted RBP14.38□□□□□ -0.11
UPF1-202ENST00000594243 IL17BQ9UHF5 180 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 RNF112Q9ULX5 631 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 SLC22A14Q9Y267 594 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 FARSAQ9Y285 508 aaKnown RBP14.38□□□□□ -0.11
UPF1-202ENST00000594243 A0A096LPK6 155 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 LOC105369274A0A096LPK9 316 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 LOC102723532A0A0G2JNH3 316 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 HYKKA2RU49 373 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 NCF1BA6NI72 391 aaPredicted RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 NCF1CA8MVU1 366 aaPredicted RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 H0YGG7 62 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 NRP2O60462 931 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 S100BP04271 92 aaPredicted RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 PIM1P11309 404 aaPredicted RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 NCF1P14598 390 aaPredicted RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 TFEBP19484 476 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 WT1P19544 449 aaPredicted RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 F8A1P23610 371 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 PTPN4P29074 926 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 CSRP3P50461 194 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 CCR8P51685 355 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 EMP3P54852 163 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 ARF3P61204 181 aaPredicted RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 RPS15AP62244 130 aaKnown RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 RHDQ02161 417 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 ACAP2Q15057 778 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 OR4D1Q15615 310 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 ZNF385CQ66K41 422 aaPredicted RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 SULT1C3Q6IMI6 304 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 KLC3Q6P597 504 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 TTLL10Q6ZVT0 673 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 ISCA2Q86U28 154 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 THOC6Q86W42 341 aaKnown RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 OR4N4Q8N0Y3 316 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 DCAKDQ8WVC6 231 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 STARD8Q92502 1023 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 PTERQ96BW5 349 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 NXNL1Q96CM4 212 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 THAP11Q96EK4 314 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 OR2A5Q96R48 311 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 CAPS2Q9BXY5 557 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 NLNQ9BYT8 704 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 ANKZF1Q9H8Y5 726 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 CNOT10Q9H9A5 744 aaKnown RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 STARD5Q9NSY2 213 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 CUTCQ9NTM9 273 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 CD274Q9NZQ7 290 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 DHCR7Q9UBM7 475 aaKnown RBP14.37□□□□□ -0.11
UPF1-202ENST00000594243 FETUBQ9UGM5 382 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 NDOR1Q9UHB4 597 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 DYRK1BQ9Y463 629 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 KCNE2Q9Y6J6 123 aa14.37□□□□□ -0.11
UPF1-202ENST00000594243 KCNE1BA0A087WTH5 132 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 A0A1B0GX78 115 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 C9J4A7 227 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 HAT1O14929 419 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 DSCR3O14972 297 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 CREG1O75629 220 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 IPO13O94829 963 aaKnown RBP14.36□□□□□ -0.11
UPF1-202ENST00000594243 KLHL2O95198 593 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 ALDOAP04075 364 aaKnown RBP14.36□□□□□ -0.11
UPF1-202ENST00000594243 SNRPAP09012 282 aaKnown RBP14.36□□□□□ -0.11
UPF1-202ENST00000594243 MYBL2P10244 700 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 CDH1P12830 882 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 GGT5P36269 586 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 GCGRP47871 477 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 CSNK1G2P78368 415 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 DLG1Q12959 904 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 C1orf189Q5VU69 101 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 ADGRD1Q6QNK2 874 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 GSPT2Q8IYD1 628 aaKnown RBP14.36□□□□□ -0.11
UPF1-202ENST00000594243 KLHDC8AQ8IYD2 350 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 TBC1D19Q8N5T2 526 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 CSNK1A1LQ8N752 337 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 ABHD11Q8NFV4 315 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 OR4K1Q8NGD4 311 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 RHEBL1Q8TAI7 183 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 SLC5A11Q8WWX8 675 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 MTBPQ96DY7 904 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 CATSPER2Q96P56 530 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 GBP5Q96PP8 586 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 OR4K3Q96R72 315 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 DHRS4Q9BTZ2 278 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 VPS11Q9H270 941 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 ALG9Q9H6U8 611 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 IGSF5Q9NSI5 407 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 WWOXQ9NZC7 414 aa14.36□□□□□ -0.11
UPF1-202ENST00000594243 IFT80Q9P2H3 777 aaPredicted RBP14.36□□□□□ -0.11
UPF1-202ENST00000594243 GPN3Q9UHW5 284 aaPredicted RBP14.36□□□□□ -0.11
UPF1-202ENST00000594243 MRPS18BQ9Y676 258 aaKnown RBP14.36□□□□□ -0.11
UPF1-202ENST00000594243 SYCE1LA8MT33 242 aa14.35□□□□□ -0.11
UPF1-202ENST00000594243 NKX2-8O15522 239 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms