RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ABCF3Q9NUQ8 709 aa14.92□□□□□ -0.02
SS18-216ENST00000580751 SIDT1Q9NXL6 827 aaKnown RBP14.92□□□□□ -0.02
SS18-216ENST00000580751 ANKMY1Q9P2S6 941 aa14.92□□□□□ -0.02
SS18-216ENST00000580751 PISDQ9UG56 409 aa14.92□□□□□ -0.02
SS18-216ENST00000580751 PTBP2Q9UKA9 531 aaKnown RBP14.92□□□□□ -0.02
SS18-216ENST00000580751 KLK4Q9Y5K2 254 aa14.92□□□□□ -0.02
SS18-216ENST00000580751 A0A1W2PNU3 283 aaPredicted RBP14.91□□□□□ -0.02
SS18-216ENST00000580751 WDR91A4D1P6 747 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 UBXN8O00124 270 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 AGRPO00253 132 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 SNRNP200O75643 2136 aaKnown RBP14.91□□□□□ -0.02
SS18-216ENST00000580751 TGDSO95455 350 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 HGFP14210 728 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 HRH2P25021 359 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 GRIA3P42263 894 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 SLC6A12P48065 614 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 BST1Q10588 318 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 RTP5Q14D33 572 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 PFKFB4Q16877 469 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 PTCHD3Q3KNS1 767 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 CFAP157Q5JU67 520 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 ZNF678Q5SXM1 525 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 KIAA1614Q5VZ46 1190 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 FOXR1Q6PIV2 292 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 IGF2-ASQ6U949 168 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 KLHDC8AQ8IYD2 350 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 PTGR2Q8N8N7 351 aaPredicted RBP14.91□□□□□ -0.02
SS18-216ENST00000580751 BMPERQ8N8U9 685 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 ZUFSPQ96AP4 578 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 PYCR2Q96C36 320 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 MECRQ9BV79 373 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 GATA5Q9BWX5 397 aaPredicted RBP14.91□□□□□ -0.02
SS18-216ENST00000580751 KLHL25Q9H0H3 589 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 FANCEQ9HB96 536 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 EML4Q9HC35 981 aaKnown RBP14.91□□□□□ -0.02
SS18-216ENST00000580751 OCIAD1Q9NX40 245 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 HAO1Q9UJM8 370 aa14.91□□□□□ -0.02
SS18-216ENST00000580751 ADAMTS20P59510 1910 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 TRABD2BA6NFA1 517 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 TCP11X1B4DZS4 312 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 EDF1O60869 148 aaKnown RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 DXOO77932 396 aaKnown RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 MLYCDO95822 493 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 VIMP08670 466 aaKnown RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 MSL3P1P0C860 447 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 EBLN1P0CF75 366 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 CCL4P13236 92 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 ITIH1P19827 911 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 RBMS1P29558 406 aaKnown RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 NAGLUP54802 743 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 ABCE1P61221 599 aaKnown RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 SH3BP2P78314 561 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 FOXK2Q01167 660 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 MC2RQ01718 297 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 OCRLQ01968 901 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 FOXM1Q08050 763 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 TUBB3Q13509 450 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 RCN2Q14257 317 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 IL11RAQ14626 422 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 ZXDCQ2QGD7 858 aaPredicted RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 TMEM164Q5U3C3 297 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 FIGLAQ6QHK4 219 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 THOC6Q86W42 341 aaKnown RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 BPHLQ86WA6 291 aaPredicted RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 C17orf64Q86WR6 236 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 FAM20CQ8IXL6 584 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 PPP4R1Q8TF05 950 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 TMEM237Q96Q45 408 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 TEFMQ96QE5 360 aaKnown RBP14.9□□□□□ -0.02
SS18-216ENST00000580751 SIKE1Q9BRV8 207 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 TMEM79Q9BSE2 394 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 DPH7Q9BTV6 452 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 DDA1Q9BW61 102 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 ASPSCR1Q9BZE9 553 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 B3GNT4Q9C0J1 378 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 SLC6A20Q9NP91 592 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 FBXO8Q9NRD0 319 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 SLC39A1Q9NY26 324 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 SNX7Q9UNH6 387 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 DYRK1BQ9Y463 629 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 AK5Q9Y6K8 562 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 IGF2RP11717 2491 aa14.9□□□□□ -0.02
SS18-216ENST00000580751 PCM1Q15154 2024 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 PMS2P1A4D2B8 440 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 SLCO1B7G3V0H7 640 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 POLR1CO15160 346 aaPredicted RBP14.89□□□□□ -0.03
SS18-216ENST00000580751 TAPBPO15533 448 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 STK16O75716 305 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 WDR47O94967 919 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 TNFSF15O95150 251 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 FAM107AO95990 144 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 RPS17P08708 135 aaKnown RBP14.89□□□□□ -0.03
SS18-216ENST00000580751 NPPBP16860 134 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 SLC1A6P48664 564 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 MAPK10P53779 464 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 CBX1P83916 185 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 GABPB1Q06547 395 aaPredicted RBP14.89□□□□□ -0.03
SS18-216ENST00000580751 KCNAB1Q14722 419 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 ZIC1Q15915 447 aa14.89□□□□□ -0.03
SS18-216ENST00000580751 ZC3H12BQ5HYM0 836 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms