RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 C2orf73Q8N5S3 287 aaPredicted RBP19.78■□□□□ 0.76
VPS53-210ENST00000571456 BMPERQ8N8U9 685 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 UBTD2Q8WUN7 234 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 SCYL1Q96KG9 808 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 SLC46A1Q96NT5 459 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 RUFY1Q96T51 708 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 NRTNQ99748 197 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 ATG10Q9H0Y0 220 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 WWOXQ9NZC7 414 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 GPRC5BQ9NZH0 403 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 PTBP2Q9UKA9 531 aaKnown RBP19.78■□□□□ 0.76
VPS53-210ENST00000571456 GRID1Q9ULK0 1009 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 PCDHGA7Q9Y5G6 932 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 KCNE2Q9Y6J6 123 aa19.78■□□□□ 0.76
VPS53-210ENST00000571456 KRT87PA6NCN2 255 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 EFCAB7A8K855 629 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 SUPT3HB4E1H0 165 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 RGS16O15492 202 aaPredicted RBP19.77■□□□□ 0.76
VPS53-210ENST00000571456 SMIM24O75264 130 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 SUPT3HO75486 399 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 STK16O75716 305 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 MYZAPP0CAP1 466 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 H2AFXP16104 143 aaPredicted RBP19.77■□□□□ 0.76
VPS53-210ENST00000571456 TAC1P20366 129 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 CRHR1P34998 444 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 GRIA3P42263 894 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 GLRBP48167 497 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 ALDH18A1P54886 795 aaKnown RBP19.77■□□□□ 0.76
VPS53-210ENST00000571456 SLC18A2Q05940 514 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 TSTA3Q13630 321 aaPredicted RBP19.77■□□□□ 0.76
VPS53-210ENST00000571456 PTCHD3Q3KNS1 767 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 CCDC153Q494R4 210 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 DCAF12Q5T6F0 453 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 FIGLAQ6QHK4 219 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 MBOAT1Q6ZNC8 495 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 SH2D5Q6ZV89 423 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 LRRC70Q7Z2Q7 622 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 TRABD2AQ86V40 505 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 FAM129CQ86XR2 697 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 SPNS2Q8IVW8 549 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 PPFIBP2Q8ND30 876 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 PGM2Q96G03 612 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 ZIM3Q96PE6 472 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 UNKQ9C0B0 810 aaKnown RBP19.77■□□□□ 0.76
VPS53-210ENST00000571456 TMEM184CQ9NVA4 438 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 XPR1Q9UBH6 696 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 MID2Q9UJV3 735 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 DYRK1BQ9Y463 629 aa19.77■□□□□ 0.76
VPS53-210ENST00000571456 GOLGA6L10A6NI86 522 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 STX16-NPEPL1H3BU86 382 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 COPEO14579 308 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 STX16O14662 325 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 MAP2K7O14733 419 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 POLR1CO15160 346 aaPredicted RBP19.76■□□□□ 0.75
VPS53-210ENST00000571456 NVLO15381 856 aaKnown RBP19.76■□□□□ 0.75
VPS53-210ENST00000571456 FGF3P11487 239 aaPredicted RBP19.76■□□□□ 0.75
VPS53-210ENST00000571456 GFAPP14136 432 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 KRT4P19013 534 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 MAGP20916 626 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 PIK3CGP48736 1102 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 CEP85LQ5SZL2 805 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 CYP4X1Q8N118 509 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 TBC1D19Q8N5T2 526 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 CCDC126Q96EE4 140 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 CCNL2Q96S94 520 aaPredicted RBP19.76■□□□□ 0.75
VPS53-210ENST00000571456 ARHGAP9Q9BRR9 750 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 DPH7Q9BTV6 452 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 ENAMQ9NRM1 1142 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 SLC39A1Q9NY26 324 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 RARRES3Q9UL19 164 aa19.76■□□□□ 0.75
VPS53-210ENST00000571456 A0A1W2PPM1 405 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 OR2A25A4D2G3 310 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 SRPX2O60687 465 aaPredicted RBP19.75■□□□□ 0.75
VPS53-210ENST00000571456 FGF5P12034 268 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 MTHFD2P13995 350 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 EZRP15311 586 aaKnown RBP19.75■□□□□ 0.75
VPS53-210ENST00000571456 NPPBP16860 134 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 GNAZP19086 355 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 GRK3P35626 688 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 KCNC1P48547 511 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 NAA20P61599 178 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 CLN3Q13286 438 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 TUBB3Q13509 450 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 CASP8Q14790 479 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 SETDB1Q15047 1291 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.75■□□□□ 0.75
VPS53-210ENST00000571456 C4orf17Q53FE4 359 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 ZNF425Q6IV72 752 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 THOC6Q86W42 341 aaKnown RBP19.75■□□□□ 0.75
VPS53-210ENST00000571456 PPP1R3BQ86XI6 285 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 ABHD11Q8NFV4 315 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 RDH11Q8TC12 318 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 N4BP2L2Q92802 583 aaPredicted RBP19.75■□□□□ 0.75
VPS53-210ENST00000571456 THAP11Q96EK4 314 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 SMC6Q96SB8 1091 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 PLCD4Q9BRC7 762 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 ACAT2Q9BWD1 397 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 CD244Q9BZW8 370 aa19.75■□□□□ 0.75
VPS53-210ENST00000571456 PITHD1Q9GZP4 211 aaPredicted RBP19.75■□□□□ 0.75
VPS53-210ENST00000571456 IQCGQ9H095 443 aaKnown RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms