RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 KLK6Q92876 244 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 CXorf40BQ96DE9 158 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SPDL1Q96EA4 605 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 KLHDC7BQ96G42 594 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 C3orf30Q96M34 536 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 C12orf66Q96MD2 445 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 KCNA7Q96RP8 456 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 DPY30Q9C005 99 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 MUC13Q9H3R2 512 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 OSGEPL1Q9H4B0 414 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 DCLRE1BQ9H816 532 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 RMND5AQ9H871 391 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 TNFRSF12AQ9NP84 129 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SPAG4Q9NPE6 437 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ACSS2Q9NR19 701 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 THEGQ9P2T0 379 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 FAM8A1Q9UBU6 413 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SLC23A2Q9UGH3 650 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 CROTQ9UKG9 612 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SNX7Q9UNH6 387 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 BTRCQ9Y297 605 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.7□□□□□ -1.18
VPS39-213ENST00000570062 SIT1Q9Y3P8 196 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 CCL27Q9Y4X3 112 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ASB1Q9Y576 335 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ENTPD2Q9Y5L3 495 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 PLXNA2O75051 1894 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 COL4A3Q01955 1670 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 KCNE1BA0A087WTH5 132 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 IGHV1OR15-9A0A0B4J2B8 117 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 SPTY2D1-AS1A0A0U1RR47 76 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 POM121BA6NF01 834 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 ANKDD1BA6NHY2 528 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 MRASO14807 208 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 LILRA1O75019 489 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 SEMA3DO95025 777 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 PDYNP01213 254 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 MTHFD1P11586 935 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 F3P13726 295 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 CTSEP14091 401 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 EPORP19235 508 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 CD72P21854 359 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 ME2P23368 584 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 BDKRB1P46663 353 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 MTTPP55157 894 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 CLDN8P56748 225 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 C21orf58P58505 322 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 PPP2CBP62714 309 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 RACK1P63244 317 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 PPP2CAP67775 309 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 RELAQ04206 551 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 PRDX1Q06830 199 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 ACSM2AQ08AH3 577 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 TBL3Q12788 808 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 TRAP1Q12931 704 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 GRB7Q14451 532 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 RPE65Q16518 533 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 C18orf21Q32NC0 220 aaPredicted RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 PLA2G4EQ3MJ16 856 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 AASDHQ4L235 1098 aaPredicted RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 RFTN2Q52LD8 501 aaPredicted RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 FBXO48Q5FWF7 155 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 WDR45BQ5MNZ6 344 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 ACSM2BQ68CK6 577 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 GALNT18Q6P9A2 607 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 PGM2L1Q6PCE3 622 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 CYP20A1Q6UW02 462 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 LYPD4Q6UWN0 246 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 TMIGD1Q6UXZ0 262 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 MBOAT1Q6ZNC8 495 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 GCNT7Q6ZNI0 430 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 FAM83HQ6ZRV2 1179 aaPredicted RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 PAGE2Q7Z2X7 111 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 R3HCC1LQ7Z5L2 792 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 LRRC56Q8IYG6 542 aaPredicted RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 ULK2Q8IYT8 1036 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 DEFB107AQ8IZN7 70 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 SIX5Q8N196 739 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 SFRP1Q8N474 314 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 LILRA3Q8N6C8 439 aaPredicted RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 GOLM1Q8NBJ4 401 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 FAM13CQ8NE31 585 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 SRFBP1Q8NEF9 429 aaKnown RBP7.69□□□□□ -1.18
VPS39-213ENST00000570062 TNIP2Q8NFZ5 429 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 PJA1Q8NG27 643 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 OR7G3Q8NG95 312 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 WDR20Q8TBZ3 569 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 GPBAR1Q8TDU6 330 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 NAT14Q8WUY8 206 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 PYCR2Q96C36 320 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 BIRC7Q96CA5 298 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 FCRL1Q96LA6 429 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 CAMK1GQ96NX5 476 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 TRIM15Q9C019 465 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 SLC6A17Q9H1V8 727 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 RHBGQ9H310 441 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 WDR41Q9HAD4 459 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 FGF22Q9HCT0 170 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 PRM3Q9NNZ6 103 aa7.69□□□□□ -1.18
VPS39-213ENST00000570062 POT1Q9NUX5 634 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms