RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CAB39LQ9H9S4 337 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 FLRT1Q9NZU1 646 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 VTI1BQ9UEU0 232 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 TLR6Q9Y2C9 796 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 PCDHGB2Q9Y5G2 931 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 USP3Q9Y6I4 520 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 TEX264Q9Y6I9 313 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 MYO18AQ92614 2054 aaKnown RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 MBLAC1A4D2B0 266 aaPredicted RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 WASHC1A8K0Z3 465 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 DPYSL4O14531 572 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 MED7O43513 233 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 KDM4BO94953 1096 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 RAF1P04049 648 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 MPOP05164 745 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 SLC2A4P14672 509 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 PDHA2P29803 388 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 RAB25P57735 213 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 RBP5P82980 135 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 GTDC1Q4AE62 458 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 DUSP28Q4G0W2 176 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 AADACL4Q5VUY2 407 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 PLET1Q6UQ28 207 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 SPRED1Q7Z699 444 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 OXR1Q8N573 874 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 NSMAFQ92636 917 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 TOP1MTQ969P6 601 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 GLOD4Q9HC38 313 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 USE1Q9NZ43 259 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 AASSQ9UDR5 926 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 FBXL21Q9UKT6 434 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 AKT3Q9Y243 479 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 ANKRD12Q6UB98 2062 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 TRAV19A0A0A6YYK7 116 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 A0A0B4J293 547 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 LOC390937A0A1W2PQ73 354 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 MROH6A6NGR9 719 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 PER2O15055 1255 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 ULK1O75385 1050 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 TADA2AO75478 443 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 LDLRP01130 860 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 GMPRP36959 345 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 ZNF81P51508 661 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 HOXC5Q00444 222 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 SOX4Q06945 474 aaPredicted RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 CAPRIN1Q14444 709 aaKnown RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 AP5B1Q2VPB7 878 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 GPR33Q49SQ1 333 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 TCTE1Q5JU00 501 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 SAMD4BQ5PRF9 694 aaKnown RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 GPR139Q6DWJ6 353 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 C3orf33Q6P1S2 294 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 ARHGAP11AQ6P4F7 1023 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 ABI3BPQ7Z7G0 1075 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 VWA5B2Q8N398 1253 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 IPMKQ8NFU5 416 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 POF1BQ8WVV4 589 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 CENPIQ92674 756 aaPredicted RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.54□□□□□ -0.727e-11■■■■■ 32
CLK3-226ENST00000569406 RNF31Q96EP0 1072 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 C10orf90Q96M02 699 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 CMSS1Q9BQ75 279 aaKnown RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 PDCD10Q9BUL8 212 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 SPHK1Q9NYA1 384 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 CCDC167Q9P0B6 97 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 LYVE1Q9Y5Y7 322 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.53□□□□□ -0.72
CLK3-226ENST00000569406 A0A1W2PQ09 198 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 B4DXG7 233 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 FABP7O15540 132 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 SNX4O95219 450 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 C9P02748 559 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 CYP17A1P05093 508 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 PDGFRAP16234 1089 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 LMO2P25791 158 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 MAGEA3P43357 314 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 CLCNKAP51800 687 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 UGT2B15P54855 530 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 PCLAFQ15004 111 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 HKDC1Q2TB90 917 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 XKR4Q5GH76 650 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 GALNT10Q86SR1 603 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 DNAAF3Q8N9W5 541 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 OR5T2Q8NGG2 359 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 SLC13A3Q8WWT9 602 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 ART5Q96L15 291 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 SLC30A2Q9BRI3 323 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 NXF3Q9H4D5 531 aaKnown RBP10.53□□□□□ -0.72
CLK3-226ENST00000569406 GTSE1Q9NYZ3 720 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 NDUFAF4Q9P032 175 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 INVSQ9Y283 1065 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 FKBP7Q9Y680 259 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 A0A1B0GVM2 712 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 H0YAE9 185 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 SLC1A7O00341 560 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 NBNO60934 754 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 UGT2B17O75795 530 aa10.53□□□□□ -0.72
CLK3-226ENST00000569406 RECQL5O94762 991 aaPredicted RBP10.53□□□□□ -0.72
CLK3-226ENST00000569406 PCMT1P22061 227 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms