RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 HIST1H2AHQ96KK5 128 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 HIST1H2AJQ99878 128 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 H2AFJQ9BTM1 129 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 DHRS4Q9BTZ2 278 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 TRIM55Q9BYV6 548 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 SLC25A18Q9H1K4 315 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 CCDC177Q9NQR7 707 aaPredicted RBP14.36□□□□□ -0.11
VPS39-210ENST00000568357 IGSF5Q9NSI5 407 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 ARL15Q9NXU5 204 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 GPN3Q9UHW5 284 aaPredicted RBP14.36□□□□□ -0.11
VPS39-210ENST00000568357 DMGDHQ9UI17 866 aaKnown RBP14.36□□□□□ -0.11
VPS39-210ENST00000568357 TUBD1Q9UJT1 453 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 MAN2B2Q9Y2E5 1009 aa14.36□□□□□ -0.11
VPS39-210ENST00000568357 RELNP78509 3460 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 SNRNP200O75643 2136 aaKnown RBP14.35□□□□□ -0.11
VPS39-210ENST00000568357 K7EM74 188 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 CDC7O00311 574 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 SUV39H1O43463 412 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 DNAJB5O75953 348 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 WISP3O95389 354 aaPredicted RBP14.35□□□□□ -0.11
VPS39-210ENST00000568357 TUBB4AP04350 444 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 OR1D4P47884 311 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 PMS2P54278 862 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 PRTGQ2VWP7 1150 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 KBTBD12Q3ZCT8 623 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 PRAMEF13Q5VWM6 474 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 COX15Q7KZN9 410 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 ADCK2Q7Z695 626 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 APLFQ8IW19 511 aaPredicted RBP14.35□□□□□ -0.11
VPS39-210ENST00000568357 CDKL2Q92772 493 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 PYCR2Q96C36 320 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 CPNE1Q99829 537 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 C17orf62Q9BQA9 187 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 SGPP1Q9BX95 441 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 CAB39LQ9H9S4 337 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 ZNF71Q9NQZ8 489 aaPredicted RBP14.35□□□□□ -0.11
VPS39-210ENST00000568357 TMEM184CQ9NVA4 438 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 UTP6Q9NYH9 597 aaKnown RBP14.35□□□□□ -0.11
VPS39-210ENST00000568357 TLK1Q9UKI8 766 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 PADI2Q9Y2J8 665 aa14.35□□□□□ -0.11
VPS39-210ENST00000568357 PTRH2Q9Y3E5 179 aaKnown RBP14.35□□□□□ -0.11
VPS39-210ENST00000568357 FLNCQ14315 2725 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 ARGFXA6NJG6 315 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 HAT1O14929 419 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 FAM155BO75949 473 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 GUCA1CO95843 209 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 ENO2P09104 434 aaPredicted RBP14.34□□□□□ -0.11
VPS39-210ENST00000568357 EZRP15311 586 aaKnown RBP14.34□□□□□ -0.11
VPS39-210ENST00000568357 AP1S2P56377 157 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 POU4F1Q01851 419 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 CHAF1BQ13112 559 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 SSPNQ14714 243 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 PPP1R3AQ16821 1122 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 HKDC1Q2TB90 917 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 CPZQ66K79 652 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 OVCH1Q7RTY7 1134 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 CTAGE3PQ8IX95 158 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 NKAPQ8N5F7 415 aaKnown RBP14.34□□□□□ -0.11
VPS39-210ENST00000568357 CSNK1A1LQ8N752 337 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 OR2Y1Q8NGV0 311 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 OR56A3Q8NH54 315 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 FBF1Q8TES7 1133 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 ANKRD7Q92527 254 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 FBXL8Q96CD0 374 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 C10orf90Q96M02 699 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 OR4K3Q96R72 315 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 RBBP8Q99708 897 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 TRIM54Q9BYV2 358 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 PCBD2Q9H0N5 130 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 GPAMQ9HCL2 828 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 NOVA2Q9UNW9 492 aaKnown RBP14.34□□□□□ -0.11
VPS39-210ENST00000568357 RUVBL1Q9Y265 456 aaKnown RBP14.34□□□□□ -0.11
VPS39-210ENST00000568357 MAU2Q9Y6X3 613 aa14.34□□□□□ -0.11
VPS39-210ENST00000568357 NPEPPSL1A6NEC2 478 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 KIF2AO00139 706 aaPredicted RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 PHGDHO43175 533 aaKnown RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 UMODP07911 640 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 CD63P08962 238 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 HRH2P25021 359 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 OTX2P32243 289 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 GP5P40197 560 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 EMP3P54852 163 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 SNRPNP63162 240 aaKnown RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 CSNK1G2P78368 415 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 UBAP2LQ14157 1087 aaKnown RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 USP10Q14694 798 aaKnown RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 NKG7Q16617 165 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 CAPN13Q6MZZ7 669 aaPredicted RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 LCTLQ6UWM7 567 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 PTRH1Q86Y79 214 aaKnown RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 SPATA6LQ8N4H0 392 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 ARHGEF39Q8N4T4 335 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 PPM1NQ8N819 430 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 MNS1Q8NEH6 495 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 C9orf43Q8TAL5 461 aaPredicted RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 PTERQ96BW5 349 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 GPR22Q99680 433 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 UNKQ9C0B0 810 aaKnown RBP14.33□□□□□ -0.12
VPS39-210ENST00000568357 ING2Q9H160 280 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 POPDC3Q9HBV1 291 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms