RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 KCNE2Q9Y6J6 123 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 KIAA1549LQ6ZVL6 1849 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 REV3LO60673 3130 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 CAPGP40121 348 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 C21orf58P58505 322 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 SRSF11Q05519 484 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 ABHD18Q0P651 414 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 PDGFRLQ15198 375 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 DUOXA1Q1HG43 343 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 DPY19L1Q2PZI1 675 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 CAPN13Q6MZZ7 669 aaPredicted RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 ANKRD26P1Q6NSI1 321 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 FAM83HQ6ZRV2 1179 aaPredicted RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 TRMT11Q7Z4G4 463 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 C11orf96Q7Z7L8 435 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 DHRSXQ8N5I4 330 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 C1orf52Q8N6N3 182 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 CHTF18Q8WVB6 975 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 NCLNQ969V3 563 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 DGCR14Q96DF8 476 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 CHFRQ96EP1 664 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 REXO5Q96IC2 774 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 CLK4Q9HAZ1 481 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 TRPV4Q9HBA0 871 aa19.59■□□□□ 0.73
CLN3-230ENST00000568076 PAPOLBQ9NRJ5 636 aaKnown RBP19.59■□□□□ 0.73
CLN3-230ENST00000568076 EPHX1P07099 455 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 COX7A2P14406 83 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 CNTN1Q12860 1018 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 MAP7Q14244 749 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 THEMIS2Q5TEJ8 643 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 LRRC56Q8IYG6 542 aaPredicted RBP19.58■□□□□ 0.73
CLN3-230ENST00000568076 OFCC1Q8IZS5 231 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 SPDYE1Q8NFV5 336 aaPredicted RBP19.58■□□□□ 0.73
CLN3-230ENST00000568076 OR8J2Q8NGG1 315 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 CDC26Q8NHZ8 85 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 SUSD6Q92537 303 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 SGPP1Q9BX95 441 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 CD320Q9NPF0 282 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 OBP2AQ9NY56 170 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 GDE1Q9NZC3 331 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 TMEM98Q9Y2Y6 226 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 PRKAB1Q9Y478 270 aa19.58■□□□□ 0.73
CLN3-230ENST00000568076 C17orf113A0A1B0GUU1 675 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 FPGTO14772 594 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 SERPINA1P01009 418 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 LAMP1P11279 417 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 ACADLP28330 430 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 TRPC1P48995 793 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 IST1P53990 364 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 ARSFP54793 590 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 CDH15P55291 814 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 ADARB1P78563 741 aaKnown RBP19.57■□□□□ 0.72
CLN3-230ENST00000568076 LAPTM5Q13571 262 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 GTF2H3Q13889 308 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 STARD3Q14849 445 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 USP51Q70EK9 711 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 CLECL1Q8IZS7 167 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 GALNT15Q8N3T1 639 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 OR9A1PQ8NGU1 263 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 OR2L2Q8NH16 312 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 ZFP28Q8NHY6 868 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 CXorf40AQ8TE69 158 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 METTL2AQ96IZ6 378 aaKnown RBP19.57■□□□□ 0.72
CLN3-230ENST00000568076 PANX1Q96RD7 426 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 THAP10Q9P2Z0 257 aaPredicted RBP19.57■□□□□ 0.72
CLN3-230ENST00000568076 GPR34Q9UPC5 381 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 DENND4AQ7Z401 1863 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 GJA4P35212 333 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 RPS13P62277 151 aaKnown RBP19.57■□□□□ 0.72
CLN3-230ENST00000568076 TAP2Q03519 686 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 TSTA3Q13630 321 aaPredicted RBP19.57■□□□□ 0.72
CLN3-230ENST00000568076 PIP5KL1Q5T9C9 394 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 MED27Q6P2C8 311 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 TTC33Q6PID6 262 aaPredicted RBP19.57■□□□□ 0.72
CLN3-230ENST00000568076 ZNF786Q8N393 782 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 DNAJC5GQ8N7S2 189 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 HM13Q8TCT9 377 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 HIC2Q96JB3 615 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 ZNF514Q96K75 400 aaPredicted RBP19.57■□□□□ 0.72
CLN3-230ENST00000568076 HAUS8Q9BT25 410 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 HDAC8Q9BY41 377 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 ZDHHC5Q9C0B5 715 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 DNAJB9Q9UBS3 223 aa19.57■□□□□ 0.72
CLN3-230ENST00000568076 KIF26AQ9ULI4 1882 aaPredicted RBP19.57■□□□□ 0.72
CLN3-230ENST00000568076 SCAMP2O15127 329 aaKnown RBP19.56■□□□□ 0.72
CLN3-230ENST00000568076 CST1P01037 141 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 ALPLP05186 524 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 EFNA1P20827 205 aaPredicted RBP19.56■□□□□ 0.72
CLN3-230ENST00000568076 PBX2P40425 430 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 ALDH3A2P51648 485 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 RUNX3Q13761 415 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 DAG1Q14118 895 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 ADRM1Q16186 407 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 EGFLAMQ63HQ2 1017 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 GPR155Q7Z3F1 870 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 GPR156Q8NFN8 814 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 WDR34Q96EX3 536 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 COX14Q96I36 57 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 PLA2G2FQ9BZM2 168 aa19.56■□□□□ 0.72
CLN3-230ENST00000568076 DPEP2Q9H4A9 486 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms