RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DHRS7Q9Y394 339 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 NEU2Q9Y3R4 380 aa15.3■□□□□ 0.04
CLN3-229ENST00000567963 GOLGA8MH3BSY2 632 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 MAP2K7O14733 419 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 KLHL18O94889 574 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 CCNDBP1O95273 360 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 MPC1LP0DKB6 136 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 EZRP15311 586 aaKnown RBP15.29■□□□□ 0.04
CLN3-229ENST00000567963 CDC16Q13042 620 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 MFAP5Q13361 173 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 TLR1Q15399 786 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 GARNL3Q5VVW2 1013 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 B3GNTL1Q67FW5 361 aaPredicted RBP15.29■□□□□ 0.04
CLN3-229ENST00000567963 CCDC137Q6PK04 289 aaKnown RBP15.29■□□□□ 0.04
CLN3-229ENST00000567963 LINC00696Q6ZRV3 163 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 NDUFAF7Q7L592 441 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 SPNS2Q8IVW8 549 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 LRRC56Q8IYG6 542 aaPredicted RBP15.29■□□□□ 0.04
CLN3-229ENST00000567963 ARHGEF39Q8N4T4 335 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 AMER3Q8N944 861 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 RERGQ96A58 199 aaPredicted RBP15.29■□□□□ 0.04
CLN3-229ENST00000567963 MMABQ96EY8 250 aaPredicted RBP15.29■□□□□ 0.04
CLN3-229ENST00000567963 CNDP1Q96KN2 507 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 C5orf34Q96MH7 638 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 YIPF2Q9BWQ6 316 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 CCDC68Q9H2F9 335 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 TRPC4Q9UBN4 977 aa15.29■□□□□ 0.04
CLN3-229ENST00000567963 NSG1A0A0A6YYJ2 146 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 IDSB3KWA1 339 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 PRPF4O43172 522 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLN3-229ENST00000567963 FOXS1O43638 330 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 ZBTB14O43829 449 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 KIF5CO60282 957 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 CLDN1O95832 211 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 SYF2O95926 243 aaKnown RBP15.28■□□□□ 0.04
CLN3-229ENST00000567963 COX6A1P12074 109 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 ENO3P13929 434 aaPredicted RBP15.28■□□□□ 0.04
CLN3-229ENST00000567963 COILP38432 576 aaPredicted RBP15.28■□□□□ 0.04
CLN3-229ENST00000567963 SKIV2L2P42285 1042 aaKnown RBP15.28■□□□□ 0.04
CLN3-229ENST00000567963 MAGEA3P43357 314 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 EMP2P54851 167 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 ABATP80404 500 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 CYP1B1Q16678 543 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 LONRF1Q17RB8 773 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 LMNTD2Q8IXW0 634 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 KBTBD2Q8IY47 623 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 AGGF1Q8N302 714 aaeCLIP15.28■□□□□ 0.04
CLN3-229ENST00000567963 GRHL3Q8TE85 626 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 PBKQ96KB5 322 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 TGIF2Q9GZN2 237 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 ABCF3Q9NUQ8 709 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 PCYOX1Q9UHG3 505 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 JRKLQ9Y4A0 524 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 COMMD10Q9Y6G5 202 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 CRYBG3Q68DQ2 2970 aa15.28■□□□□ 0.04
CLN3-229ENST00000567963 UNC79Q9P2D8 2635 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 A0A1W2PQ72 361 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 SMAPO00193 183 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 TXNDC9O14530 226 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 FFAR3O14843 346 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 GPR42O15529 346 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 HAUS5O94927 633 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 PRR35P0CG20 571 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 CXCR2P25025 360 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 SLC1A2P43004 574 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 FAM53BQ14153 422 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 MAMDC2Q7Z304 686 aaPredicted RBP15.27■□□□□ 0.04
CLN3-229ENST00000567963 NAT8LQ8N9F0 302 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 CATSPER1Q8NEC5 780 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 CD200R1Q8TD46 325 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 CALML6Q8TD86 181 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 FAR1Q8WVX9 515 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 PSMF1Q92530 271 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 SIGLEC10Q96LC7 697 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 GPR21Q99679 349 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 EBNA1BP2Q99848 306 aaKnown RBP15.27■□□□□ 0.04
CLN3-229ENST00000567963 DRC3Q9H069 523 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 MKKSQ9NPJ1 570 aaPredicted RBP15.27■□□□□ 0.04
CLN3-229ENST00000567963 C20orf96Q9NUD7 363 aaPredicted RBP15.27■□□□□ 0.04
CLN3-229ENST00000567963 C14orf105Q9NVL8 296 aa15.27■□□□□ 0.04
CLN3-229ENST00000567963 IGHV1-45A0A0A0MS14 117 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 A0A0A6YYC8 382 aaPredicted RBP15.27■□□□□ 0.03
CLN3-229ENST00000567963 H7BY64 318 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 I3L1I5 382 aaPredicted RBP15.27■□□□□ 0.03
CLN3-229ENST00000567963 PCDH17O14917 1159 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 HAT1O14929 419 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 HEXBP07686 556 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 ANXA5P08758 320 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 IMPA1P29218 277 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 THEMIS2Q5TEJ8 643 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 RPUSD3Q6P087 351 aaKnown RBP15.27■□□□□ 0.03
CLN3-229ENST00000567963 UBE2R2Q712K3 238 aaPredicted RBP15.27■□□□□ 0.03
CLN3-229ENST00000567963 ADCK2Q7Z695 626 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 PRAP1Q96NZ9 151 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 NAP1L3Q99457 506 aaPredicted RBP15.27■□□□□ 0.03
CLN3-229ENST00000567963 FBXO5Q9UKT4 447 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 MAD1L1Q9Y6D9 718 aa15.27■□□□□ 0.03
CLN3-229ENST00000567963 POLEQ07864 2286 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 DOPEY1Q5JWR5 2465 aa15.26■□□□□ 0.03
CLN3-229ENST00000567963 CELSR2Q9HCU4 2923 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms