RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ICE2Q659A1 982 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 BPHLQ86WA6 291 aaPredicted RBP16.56■□□□□ 0.24
CLN3-217ENST00000565354 FAM26EQ8N5C1 309 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 IL22RA1Q8N6P7 574 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 OR2A1Q8NGT9 310 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 STAG3L4Q8TBR4 150 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 PMEPA1Q969W9 287 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 KIAA1191Q96A73 305 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 ZUFSPQ96AP4 578 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 NXNL1Q96CM4 212 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 CABS1Q96KC9 395 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 DHRS4Q9BTZ2 278 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 SLC7A5P2Q9GIP4 190 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 TWSG1Q9GZX9 223 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 ALG9Q9H6U8 611 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 WWOXQ9NZC7 414 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 SERTAD3Q9UJW9 196 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 RAB21Q9UL25 225 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 SUPT3HB4E1H0 165 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 SUPT3HO75486 399 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 KLHL2O95198 593 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 LIFP15018 202 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 GCAP28676 217 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 GRIA3P42263 894 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 SLCO1A2P46721 670 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 HNMTP50135 292 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 DLG1Q12959 904 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 NAA30Q147X3 362 aaPredicted RBP16.55■□□□□ 0.24
CLN3-217ENST00000565354 TGFBIQ15582 683 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 OR4D1Q15615 310 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 C4orf17Q53FE4 359 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 ZC3H12BQ5HYM0 836 aaKnown RBP16.55■□□□□ 0.24
CLN3-217ENST00000565354 CDHR3Q6ZTQ4 885 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 C17orf64Q86WR6 236 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 TMEM126BQ8IUX1 230 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 GPR135Q8IZ08 494 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 TCAIMQ8N3R3 496 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 OR8K5Q8NH50 307 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 PTERQ96BW5 349 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 PYCR2Q96C36 320 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 SCYL1Q96KG9 808 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 CATSPER2Q96P56 530 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 HAUS8Q9BT25 410 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 DPH7Q9BTV6 452 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 ULBP3Q9BZM4 244 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 IGSF5Q9NSI5 407 aa16.55■□□□□ 0.24
CLN3-217ENST00000565354 SYCE1LA8MT33 242 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 TARM1B6A8C7 271 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 ERLIN1O75477 346 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 FGF5P12034 268 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 KRT15P19012 456 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 GLRBP48167 497 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 PRDX1Q06830 199 aaKnown RBP16.54■□□□□ 0.24
CLN3-217ENST00000565354 ACAP2Q15057 778 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 ZIC1Q15915 447 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 TSNAXIP1Q2TAA8 658 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLN3-217ENST00000565354 LCTLQ6UWM7 567 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 LRRC56Q8IYG6 542 aaPredicted RBP16.54■□□□□ 0.24
CLN3-217ENST00000565354 C9orf43Q8TAL5 461 aaPredicted RBP16.54■□□□□ 0.24
CLN3-217ENST00000565354 ISL2Q96A47 359 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 ZNF501Q96CX3 271 aaPredicted RBP16.54■□□□□ 0.24
CLN3-217ENST00000565354 CHRNA10Q9GZZ6 450 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 FAM60AQ9NP50 221 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 PCMTD2Q9NV79 361 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 SNX7Q9UNH6 387 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 PLCL2Q9UPR0 1127 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 DYRK1BQ9Y463 629 aa16.54■□□□□ 0.24
CLN3-217ENST00000565354 TLDC2A0PJX2 215 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 ZNF891A8MT65 544 aaPredicted RBP16.53■□□□□ 0.24
CLN3-217ENST00000565354 E7EQ34 232 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 KERAO60938 352 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 SCRG1O75711 98 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 STK17BO94768 372 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 KIAA0754O94854 1291 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 MT-ND3P03897 115 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 HRH2P25021 359 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 MAGEA12P43365 314 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 ITGA1P56199 1179 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 FCRL6Q6DN72 434 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 SULT1C3Q6IMI6 304 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 ISCA2Q86U28 154 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 CACNA2D3Q8IZS8 1091 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 CENPLQ8N0S6 344 aaPredicted RBP16.53■□□□□ 0.24
CLN3-217ENST00000565354 OR56A3Q8NH54 315 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 EPS8L3Q8TE67 593 aaKnown RBP16.53■□□□□ 0.24
CLN3-217ENST00000565354 RNF31Q96EP0 1072 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 FCRL4Q96PJ5 515 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 CNOT10Q9H9A5 744 aaKnown RBP16.53■□□□□ 0.24
CLN3-217ENST00000565354 SLC6A20Q9NP91 592 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 RRAGDQ9NQL2 400 aaPredicted RBP16.53■□□□□ 0.24
CLN3-217ENST00000565354 ZNF71Q9NQZ8 489 aaPredicted RBP16.53■□□□□ 0.24
CLN3-217ENST00000565354 NUDT4Q9NZJ9 180 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 CENPEQ02224 2701 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 ITPR2Q14571 2701 aa16.53■□□□□ 0.24
CLN3-217ENST00000565354 A0A0J9YVX5 310 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 CCDC189A1A4V9 331 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 CDH16O75309 829 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 OR2B3O76000 313 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 WDR47O94967 919 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms