RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 UGT3A1Q6NUS8 523 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 IGFL2Q6UWQ7 119 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 MBOAT1Q6ZNC8 495 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 LAPTM4BQ86VI4 370 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 SHISA5Q8N114 240 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 CSNK1A1LQ8N752 337 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 CLEC1AQ8NC01 280 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 OR11G2Q8NGC1 345 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 STT3BQ8TCJ2 826 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 PNPLA2Q96AD5 504 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 LRRC39Q96DD0 335 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 MVB12AQ96EY5 273 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 CCDC138Q96M89 665 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 NAPGQ99747 312 aaPredicted RBP14.16□□□□□ -0.14
CLN3-213ENST00000565047 MCMBPQ9BTE3 642 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 SGPP1Q9BX95 441 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 PARVBQ9HBI1 364 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 ATP13A2Q9NQ11 1180 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 SEMA3GQ9NS98 782 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 MOCS1Q9NZB8 636 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 TRMT6Q9UJA5 497 aaKnown RBP14.16□□□□□ -0.14
CLN3-213ENST00000565047 FBXL4Q9UKA2 621 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 IKZF3Q9UKT9 509 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 SH2B3Q9UQQ2 575 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 HECTD1Q9ULT8 2610 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 SHANK1Q9Y566 2161 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 A0A1W2PQ72 361 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 TTLL8A6PVC2 850 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 H7BY64 318 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 CCDC188H7C350 402 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 SLC16A5O15375 505 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 ALOX12BO75342 701 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 CCNDBP1O95273 360 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 SYF2O95926 243 aaKnown RBP14.15□□□□□ -0.14
CLN3-213ENST00000565047 C8GP07360 202 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 FDXRP22570 491 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 AIMP2Q13155 320 aaKnown RBP14.15□□□□□ -0.14
CLN3-213ENST00000565047 DSG2Q14126 1118 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 UBAP2LQ14157 1087 aaKnown RBP14.15□□□□□ -0.14
CLN3-213ENST00000565047 PLEKHN1Q494U1 663 aaPredicted RBP14.15□□□□□ -0.14
CLN3-213ENST00000565047 PRR30Q53SZ7 412 aaPredicted RBP14.15□□□□□ -0.14
CLN3-213ENST00000565047 VWA2Q5GFL6 755 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 PRAMEF13Q5VWM6 474 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 LRRC8EQ6NSJ5 796 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 TMEM207Q6UWW9 146 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 VN1R4Q7Z5H5 301 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 PLD3Q8IV08 490 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 PDIK1LQ8N165 341 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 CPT1CQ8TCG5 803 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 TM4SF19Q96DZ7 209 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 RUNDC3BQ96NL0 473 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 PRAP1Q96NZ9 151 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 OLFM1Q99784 485 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 TGIF2Q9GZN2 237 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 TMEM184CQ9NVA4 438 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 CDC23Q9UJX2 597 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 CHMP2BQ9UQN3 213 aa14.15□□□□□ -0.14
CLN3-213ENST00000565047 MRPS2Q9Y399 296 aaKnown RBP14.15□□□□□ -0.14
CLN3-213ENST00000565047 NBPF19A0A087WUL8 3843 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 NPPBP16860 134 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 UQCRFS1P47985 274 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 TBPL1P62380 186 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 CSNK1G2P78368 415 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 SP140Q13342 867 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 FAM53BQ14153 422 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 FASTKD3Q14CZ7 662 aaKnown RBP14.14□□□□□ -0.15
CLN3-213ENST00000565047 INPP5JQ15735 1006 aaPredicted RBP14.14□□□□□ -0.15
CLN3-213ENST00000565047 HIF1AQ16665 826 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 HECTD2Q5U5R9 776 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 AGTRAPQ6RW13 159 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 Q6ZS92 163 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 GALNT11Q8NCW6 608 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 MCOLN3Q8TDD5 553 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 PDLIM5Q96HC4 596 aaKnown RBP14.14□□□□□ -0.15
CLN3-213ENST00000565047 BARD1Q99728 777 aaKnown RBP14.14□□□□□ -0.15
CLN3-213ENST00000565047 MFRPQ9BY79 579 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 RNF14Q9UBS8 474 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 ZNF282Q9UDV7 671 aaPredicted RBP14.14□□□□□ -0.15
CLN3-213ENST00000565047 VWA7Q9Y334 891 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 PSAT1Q9Y617 370 aa14.14□□□□□ -0.15
CLN3-213ENST00000565047 MDC1Q14676 2089 aaKnown RBP14.14□□□□□ -0.15
CLN3-213ENST00000565047 LCMT2O60294 686 aaKnown RBP14.13□□□□□ -0.15
CLN3-213ENST00000565047 HRH2P25021 359 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 RPL21P46778 160 aaKnown RBP14.13□□□□□ -0.15
CLN3-213ENST00000565047 RGS4P49798 205 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 TSTA3Q13630 321 aaPredicted RBP14.13□□□□□ -0.15
CLN3-213ENST00000565047 COL26A1Q96A83 441 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 MIEF2Q96C03 454 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 LINGO1Q96FE5 620 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 SNF8Q96H20 258 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 CABS1Q96KC9 395 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 OR4K3Q96R72 315 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 CRB3Q9BUF7 120 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 SARGQ9BW04 601 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 ATG10Q9H0Y0 220 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 CCDC177Q9NQR7 707 aaPredicted RBP14.13□□□□□ -0.15
CLN3-213ENST00000565047 UTP6Q9NYH9 597 aaKnown RBP14.13□□□□□ -0.15
CLN3-213ENST00000565047 LUZP4Q9P127 313 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 CORO1CQ9ULV4 474 aaPredicted RBP14.13□□□□□ -0.15
CLN3-213ENST00000565047 G3BP2Q9UN86 482 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms