RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PRPS1L1P21108 318 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 RAB28P51157 221 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 HNRNPFP52597 415 aaKnown RBP12.44□□□□□ -0.42
SNX1-211ENST00000560829 RPS13P62277 151 aaKnown RBP12.44□□□□□ -0.42
SNX1-211ENST00000560829 TFF2Q03403 129 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 ACSM2AQ08AH3 577 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 MTAPQ13126 283 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 DDX39BQ13838 428 aaKnown RBP12.44□□□□□ -0.42
SNX1-211ENST00000560829 FXNQ16595 210 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 DPY19L1Q2PZI1 675 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 SPIN4Q56A73 249 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 TMEM31Q5JXX7 168 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 TPRG1LQ5T0D9 272 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 ACSM2BQ68CK6 577 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 ADNP2Q6IQ32 1131 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 ENPP7Q6UWV6 458 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 ABRAXAS1Q6UWZ7 409 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 RNF111Q6ZNA4 994 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 ABI3BPQ7Z7G0 1075 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 C17orf64Q86WR6 236 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 NUDT8Q8WV74 236 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 DUS3LQ96G46 650 aaKnown RBP12.44□□□□□ -0.42
SNX1-211ENST00000560829 TSSK3Q96PN8 268 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 PCDHAC1Q9H158 963 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 MUC13Q9H3R2 512 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 DMRT3Q9NQL9 472 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 CA5BQ9Y2D0 317 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 MAN2B2Q9Y2E5 1009 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 NEUROG3Q9Y4Z2 214 aa12.44□□□□□ -0.42
SNX1-211ENST00000560829 PDZK1P1A8MUH7 402 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 DNAJA2O60884 412 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 MYO1DO94832 1006 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 KCNH1O95259 989 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 CDH1P12830 882 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 OXTRP30559 389 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 PKLRP30613 574 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 SESN3P58005 492 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 RHDQ02161 417 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 RPE65Q16518 533 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 MAPKAPK3Q16644 382 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 PUS10Q3MIT2 529 aaKnown RBP12.43□□□□□ -0.42
SNX1-211ENST00000560829 KIAA0895LQ68EN5 471 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 TMIGD1Q6UXZ0 262 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 PTRH1Q86Y79 214 aaKnown RBP12.43□□□□□ -0.42
SNX1-211ENST00000560829 KRT78Q8N1N4 520 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 LINC01555Q8NAE3 123 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 FLCNQ8NFG4 579 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 OR4K1Q8NGD4 311 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 OR8J3Q8NGG0 315 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 OR2L8Q8NGY9 312 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 CLHC1Q8NHS4 586 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 DNAJB14Q8TBM8 379 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 ZUFSPQ96AP4 578 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 CGREF1Q99674 301 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 PITHD1Q9GZP4 211 aaPredicted RBP12.43□□□□□ -0.42
SNX1-211ENST00000560829 SPNS1Q9H2V7 528 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 NT5DC2Q9H857 520 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 LMAN1LQ9HAT1 526 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 IMP3Q9NV31 184 aaKnown RBP12.43□□□□□ -0.42
SNX1-211ENST00000560829 TAC3Q9UHF0 121 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 ADGRE2Q9UHX3 823 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 DMTF1Q9Y222 760 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 HEBP2Q9Y5Z4 205 aa12.43□□□□□ -0.42
SNX1-211ENST00000560829 TCRBV3S1A0A5B6 114 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 PRAMEF26H0Y7S4 382 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 MTHFD1P11586 935 aaKnown RBP12.42□□□□□ -0.42
SNX1-211ENST00000560829 CXCR2P25025 360 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 NUDT1P36639 197 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 RAE1P78406 368 aaKnown RBP12.42□□□□□ -0.42
SNX1-211ENST00000560829 FZD5Q13467 585 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 GAS6Q14393 721 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 RABL3Q5HYI8 236 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 IRAK1BP1Q5VVH5 260 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 SYT12Q8IV01 421 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 PGBD3Q8N328 593 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 GOLM1Q8NBJ4 401 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 STARD8Q92502 1023 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 EGLN2Q96KS0 407 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 OR52E6Q96RD3 313 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 RHBGQ9H310 441 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 ALG2Q9H553 416 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 C6orf106Q9H6K1 298 aaPredicted RBP12.42□□□□□ -0.42
SNX1-211ENST00000560829 KIR3DX1Q9H7L2 352 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 PRDM8Q9NQV8 689 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 TRNAU1APQ9NX07 287 aaKnown RBP12.42□□□□□ -0.42
SNX1-211ENST00000560829 WSB2Q9NYS7 404 aaPredicted RBP12.42□□□□□ -0.42
SNX1-211ENST00000560829 MAPRE3Q9UPY8 281 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 MRPS17Q9Y2R5 130 aaKnown RBP12.42□□□□□ -0.42
SNX1-211ENST00000560829 LRRC42Q9Y546 428 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 TRBV5-3A0A0A0MS03 114 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 OR52A4PA6NMU1 304 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 CASQ2O14958 399 aaPredicted RBP12.42□□□□□ -0.42
SNX1-211ENST00000560829 ERN1O75460 977 aaKnown RBP12.42□□□□□ -0.42
SNX1-211ENST00000560829 BAG2O95816 211 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 IL9P15248 144 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 FOSL2P15408 326 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 SERPINB1P30740 379 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 TIA1P31483 386 aaKnown RBP eCLIP12.42□□□□□ -0.429e-6■□□□□ 8.2
SNX1-211ENST00000560829 S100A3P33764 101 aa12.42□□□□□ -0.42
SNX1-211ENST00000560829 ASMTP46597 345 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms