RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 S100BP04271 92 aaPredicted RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 ANXA5P08758 320 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 PRKAR1AP10644 381 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 PVRP15151 417 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 ZNF28P17035 718 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 ALAS2P22557 587 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 SPRP35270 261 aaPredicted RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 SCTRP47872 440 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 HNMTP50135 292 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 PLTPP55058 493 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 AP2B1P63010 937 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 POU4F1Q01851 419 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 OCA2Q04671 838 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 PRDX1Q06830 199 aaKnown RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 C2orf54Q08AI8 447 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 NCF4Q15080 339 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 TBR1Q16650 682 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 KIF26BQ2KJY2 2108 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 SOWAHCQ53LP3 525 aaPredicted RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 HECTD2Q5U5R9 776 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 GARNL3Q5VVW2 1013 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 ZNF605Q86T29 641 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 CCDC25Q86WR0 208 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 C17orf64Q86WR6 236 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 CTAGE3PQ8IX95 158 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 CPNE9Q8IYJ1 553 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 UNC5BQ8IZJ1 945 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 TCAIMQ8N3R3 496 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 DNAJC22Q8N4W6 341 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 C9orf43Q8TAL5 461 aaPredicted RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 FAM81AQ8TBF8 368 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 TTC9Q92623 222 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 MVB12AQ96EY5 273 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 PDLIM5Q96HC4 596 aaKnown RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 KLHL25Q9H0H3 589 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 ACTL8Q9H568 366 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 CNOT10Q9H9A5 744 aaKnown RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 ACSS2Q9NR19 701 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 PAPOLBQ9NRJ5 636 aaKnown RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 SPHK1Q9NYA1 384 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 TSR3Q9UJK0 312 aaKnown RBP8.32□□□□□ -1.08
USP3-208ENST00000558285 NFS1Q9Y697 457 aa8.32□□□□□ -1.08
USP3-208ENST00000558285 GMNCA6NCL1 334 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 AHSGP02765 367 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 ALPPP05187 535 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 ERGP11308 486 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 CXCR2P25025 360 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 GP5P40197 560 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 POLE2P56282 527 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 RPS15AP62244 130 aaKnown RBP8.31□□□□□ -1.08
USP3-208ENST00000558285 ELF3P78545 371 aaPredicted RBP8.31□□□□□ -1.08
USP3-208ENST00000558285 MRPS35P82673 323 aaKnown RBP8.31□□□□□ -1.08
USP3-208ENST00000558285 KCNAB2Q13303 367 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 CUL1Q13616 776 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 ERV3-1Q14264 604 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 DEFB109BQ30KR1 87 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 TTMPQ5BVD1 217 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 PRAMEF13Q5VWM6 474 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 DUPD1Q68J44 220 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 C3orf62Q6ZUJ4 267 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 MED25Q71SY5 747 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 TMEM102Q8N9M5 508 aaPredicted RBP8.31□□□□□ -1.08
USP3-208ENST00000558285 LINC01555Q8NAE3 123 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 LZICQ8WZA0 190 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 TM9SF4Q92544 642 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 EXTL1Q92935 676 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 PTERQ96BW5 349 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 THOC1Q96FV9 657 aaKnown RBP8.31□□□□□ -1.08
USP3-208ENST00000558285 CRELD1Q96HD1 420 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 ATP6V1G3Q96LB4 118 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 IL17FQ96PD4 163 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 PKP4Q99569 1192 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 TSC22D3Q99576 134 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 NDNQ99608 321 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 DPH7Q9BTV6 452 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 CHST8Q9H2A9 424 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 WDR54Q9H977 334 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 GPAMQ9HCL2 828 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 PCMTD2Q9NV79 361 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 TMEM184CQ9NVA4 438 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 MOCS1Q9NZB8 636 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 TAC3Q9UHF0 121 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 DYRK1BQ9Y463 629 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 PCDHGB7Q9Y5F8 929 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 AKAP13Q12802 2813 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 PTPRQQ9UMZ3 2332 aa8.31□□□□□ -1.08
USP3-208ENST00000558285 PIKFYVEQ9Y2I7 2098 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 FAM95CA0A1B0GW59 222 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 HYKKA2RU49 373 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 URADA6NGE7 173 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 DSCR3O14972 297 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 NKX2-8O15522 239 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 IPO13O94829 963 aaKnown RBP8.3□□□□□ -1.08
USP3-208ENST00000558285 SLC16A8O95907 504 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 STMN1P16949 149 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 SAT1P21673 171 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 FDXRP22570 491 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 VARSP26640 1264 aaKnown RBP8.3□□□□□ -1.08
USP3-208ENST00000558285 RORAP35398 523 aa8.3□□□□□ -1.08
USP3-208ENST00000558285 GRIA3P42263 894 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms