RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 HSD17B3P37058 310 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 GLRBP48167 497 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 TMPRSS3P57727 454 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 GPS2Q13227 327 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 GRM7Q14831 915 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 ACAP2Q15057 778 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 SULT1C3Q6IMI6 304 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 FRMPD2BQ6IN97 320 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 FBXO42Q6P3S6 717 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 C19orf48Q6RUI8 117 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 CCDC81Q6ZN84 652 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 THOC6Q86W42 341 aaKnown RBP13.01□□□□□ -0.33
SHMT2-228ENST00000557302 TTC29Q8NA56 475 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-228ENST00000557302 SLC38A9Q8NBW4 561 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 PDPRQ8NCN5 879 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 RHEBL1Q8TAI7 183 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 SLC5A11Q8WWX8 675 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 MR1Q95460 341 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 TSNARE1Q96NA8 513 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 ZNF285Q96NJ3 590 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 OR4K3Q96R72 315 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 ATOH8Q96SQ7 321 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 NDC1Q9BTX1 674 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 EFHD1Q9BUP0 239 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 PARD6BQ9BYG5 372 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 CNOT10Q9H9A5 744 aaKnown RBP13.01□□□□□ -0.33
SHMT2-228ENST00000557302 PPCSQ9HAB8 311 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 PCMTD2Q9NV79 361 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 SLC22A14Q9Y267 594 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 LOC105369274A0A096LPK9 316 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 LOC102723532A0A0G2JNH3 316 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 LOC101059948A0A1B0GTJ6 334 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 H0YGG7 62 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 UBXN8O00124 270 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 MEN1O00255 615 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 WDR47O94967 919 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 SHBGP04278 402 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 EIF2S1P05198 315 aaKnown RBP13□□□□□ -0.33
SHMT2-228ENST00000557302 COL6A2P12110 1019 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 LIFP15018 202 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 RORAP35398 523 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 GRK3P35626 688 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 SLC6A12P48065 614 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 KCNC1P48547 511 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 CCR8P51685 355 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 ARSFP54793 590 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 ARF3P61204 181 aaPredicted RBP13□□□□□ -0.33
SHMT2-228ENST00000557302 RPS15AP62244 130 aaKnown RBP13□□□□□ -0.33
SHMT2-228ENST00000557302 CSNK1G2P78368 415 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 SRSF6Q13247 344 aaKnown RBP13□□□□□ -0.33
SHMT2-228ENST00000557302 TSNAXIP1Q2TAA8 658 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 C18orf21Q32NC0 220 aaPredicted RBP13□□□□□ -0.33
SHMT2-228ENST00000557302 WASHC2DQ5SRD0 308 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 YOD1Q5VVQ6 348 aaPredicted RBP13□□□□□ -0.33
SHMT2-228ENST00000557302 RHBDD2Q6NTF9 364 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 TIFABQ6ZNK6 161 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 PLD3Q8IV08 490 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 KLHDC8AQ8IYD2 350 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 DSELQ8IZU8 1212 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 OR4N4Q8N0Y3 316 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 ABHD11Q8NFV4 315 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 PROKR1Q8TCW9 393 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 CAVIN3Q969G5 261 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 NEIL2Q969S2 332 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 RERGQ96A58 199 aaPredicted RBP13□□□□□ -0.33
SHMT2-228ENST00000557302 CABS1Q96KC9 395 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 GPR78Q96P69 363 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 OR2A5Q96R48 311 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 TMEM79Q9BSE2 394 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 CPNE5Q9HCH3 593 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 ENAMQ9NRM1 1142 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 STARD5Q9NSY2 213 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 TXLNGQ9NUQ3 528 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 CROTQ9UKG9 612 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 KCNE2Q9Y6J6 123 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 ZFYVE26Q68DK2 2539 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 PCM1Q15154 2024 aa13□□□□□ -0.33
SHMT2-228ENST00000557302 TAPBPO15533 448 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 EFSO43281 561 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 RFPL1O75677 317 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 STK16O75716 305 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 TUBBP07437 444 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 AGXTP21549 392 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 GGT5P36269 586 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 DLSTP36957 453 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 GDF5P43026 501 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 SLCO1A2P46721 670 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 CXADRP78310 365 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 COL28A1Q2UY09 1125 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 FAM199XQ6PEV8 388 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-228ENST00000557302 TDRPQ86YL5 185 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 PLD6Q8N2A8 252 aaKnown RBP12.99□□□□□ -0.33
SHMT2-228ENST00000557302 TBC1D19Q8N5T2 526 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 CSNK1A1LQ8N752 337 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 ZSCAN1Q8NBB4 408 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 CT55Q8WUE5 264 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 THAP11Q96EK4 314 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 DPH2Q9BQC3 489 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-228ENST00000557302 CHST8Q9H2A9 424 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 PELI2Q9HAT8 420 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms