RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	DEDD2	Q8WXF8	326 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	EFHD2	Q96C19	240 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	LGALS12	Q96DT0	336 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	C11orf24	Q96F05	449 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MSANTD3	Q96H12	275 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	COL21A1	Q96P44	957 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ACBD6	Q9BR61	282 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TTTY10	Q9BZA0	68 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	POLR2J2	Q9GZM3	115 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMEM248	Q9NWD8	314 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	HECA	Q9UBI9	543 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ABCG2	Q9UNQ0	655 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ENTPD4	Q9Y227	616 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	HMX2	A2RU54	273 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CD8B2	A6NJW9	211 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF701	M0R085	212 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	APOL3	O95236	402 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CD8B	P10966	210 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CD1E	P15812	388 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	HRH2	P25021	359 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	STOM	P27105	288 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRDX3	P30048	256 aa	Known RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	GK	P32189	559 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	TGFBR1	P36897	503 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PTGER3	P43115	390 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARSD	P51689	593 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	FCGRT	P55899	365 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	LGALS3BP	Q08380	585 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	DUSP4	Q13115	394 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MTAP	Q13126	283 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCBP2	Q15366	365 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	UAP1L1	Q3KQV9	507 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	C6orf136	Q5SQH8	315 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	C22orf42	Q6IC83	251 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MED27	Q6P2C8	311 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	LYSMD3	Q7Z3D4	306 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	VTCN1	Q7Z7D3	282 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MON1A	Q86VX9	555 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	ELMOD2	Q8IZ81	293 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	PELI3	Q8N2H9	469 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	CELF2-AS1	Q8N7Q2	184 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	KDM1B	Q8NB78	822 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	GLB1L3	Q8NCI6	653 aa	Predicted RBP	4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	COQ8A	Q8NI60	647 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	BPIFB1	Q8TDL5	484 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAGIX	Q9H6Y5	334 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	BEX1	Q9HBH7	125 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	KLHL28	Q9NXS3	571 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	SEC14L3	Q9UDX4	400 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	BAIAP2	Q9UQB8	552 aa		4.85	□□□□□ -1.63
SYNE2-223	ENST00000557005	NHSL1	Q5SYE7	1610 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005		A0A0G2JLL6	359 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005		A0A1W2PRG6	482 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	TCRBV5S1A1T	A0A578	114 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	AGAP5	A6NIR3	686 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	NEDD8-MDP1	E9PL57	170 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005		I3L521	148 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	UBFD1	O14562	309 aa	Known RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	CXCL11	O14625	94 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	STX16	O14662	325 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	AXIN1	O15169	862 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	NCR1	O76036	304 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	KDM4B	O94953	1096 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	HLA-DQA2	P01906	255 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCCB	P05166	539 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	FPR1	P21462	350 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PPIB	P23284	216 aa	Known RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PBX3	P40426	434 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAGEA3	P43357	314 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MAPKAPK2	P49137	400 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	SNRPD1	P62314	119 aa	Known RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MVK	Q03426	396 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PUDP	Q08623	228 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ST3GAL4	Q11206	333 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	MTA1	Q13330	715 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	NAE1	Q13564	534 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	HSF5	Q4G112	596 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	FBXO43	Q4G163	708 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ATAT1	Q5SQI0	421 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	SNAP47	Q5SQN1	464 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM220A	Q7Z4H9	259 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRRT2	Q7Z6L0	340 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	HOMEZ	Q8IX15	550 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	DTWD1	Q8N5C7	304 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARRDC4	Q8NCT1	418 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	CHDH	Q8NE62	594 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR6C4	Q8NGE1	309 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR6Q1	Q8NGQ2	317 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	CEP76	Q8TAP6	659 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ASB15	Q8WXK1	588 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	CDKN2AIPNL	Q96HQ2	116 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ERMAP	Q96PL5	475 aa	Predicted RBP	4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM129B	Q96TA1	746 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZSCAN5A	Q9BUG6	496 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	GSDMC	Q9BYG8	508 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR51E2	Q9H255	320 aa		4.84	□□□□□ -1.63
SYNE2-223	ENST00000557005	ABHD16B	Q9H3Z7	469 aa		4.84	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms