RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 SPEGQ15772 3267 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 FEZF1A0PJY2 475 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 ATP8B1O43520 1251 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 KATNA1O75449 491 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 EPORP19235 508 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 ITIH1P19827 911 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 HRH2P25021 359 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 GRK3P35626 688 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 ETV4P43268 484 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 SERPINB4P48594 390 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 CSNK1G2P78368 415 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 GPS2Q13227 327 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 CHIT1Q13231 466 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 TUBB3Q13509 450 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 UNC50Q53HI1 259 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 LIPMQ5VYY2 423 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 PAQR7Q86WK9 346 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 D2HGDHQ8N465 521 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 TRPC4APQ8TEL6 797 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 GRAMD1AQ96CP6 724 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 RNF31Q96EP0 1072 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 CTRCQ99895 268 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 TMEM184CQ9NVA4 438 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 KLK13Q9UKR3 277 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 BTRCQ9Y297 605 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 OR2A25A4D2G3 310 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 PLD2O14939 933 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 TRIM13O60858 407 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 CTSVO60911 334 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 H2AFYO75367 372 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 EIF2S1P05198 315 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 BPGMP07738 259 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 C1GALT1C1LP0DN25 315 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 CCNG1P51959 295 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 ASPHQ12797 758 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 COL9A2Q14055 689 aaPredicted RBP13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 DOC2AQ14183 400 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 SLBPQ14493 270 aaKnown RBP eCLIP13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 RBBP5Q15291 538 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 ZNF425Q6IV72 752 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 METTL2BQ6P1Q9 378 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 SLCO4C1Q6ZQN7 724 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 ZCCHC23Q6ZST2 131 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 NUDCD3Q8IVD9 361 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 ABHD11Q8NFV4 315 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 WDR36Q8NI36 951 aaKnown RBP13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 ZNF483Q8TF39 744 aaPredicted RBP13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 L3HYPDHQ96EM0 354 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 CDK15Q96Q40 435 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 ZFYVE21Q9BQ24 234 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 SPNS1Q9H2V7 528 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 PELI2Q9HAT8 420 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 FANCEQ9HB96 536 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 FGF21Q9NSA1 209 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 ANKMY1Q9P2S6 941 aa13.47□□□□□ -0.25
VIPAS39-208ENST00000556412 TMEM150CB9EJG8 249 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 HCRTR1O43613 425 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 OR1F1O43749 312 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 STATHP02808 62 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 FGF3P11487 239 aaPredicted RBP13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 EZRP15311 586 aaKnown RBP13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 DNAJB13P59910 316 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 ACY1Q03154 408 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 CLCQ05315 142 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 EIF3IQ13347 325 aaKnown RBP13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 ZC3H12BQ5HYM0 836 aaKnown RBP13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 ATG9BQ674R7 924 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 MCATQ8IVS2 390 aaKnown RBP13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 TBC1D19Q8N5T2 526 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 ZNF740Q8NDX6 193 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 OR52B6Q8NGF0 335 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 MDM1Q8TC05 714 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 AIF1LQ9BQI0 150 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 SCNM1Q9BWG6 230 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 ZBTB26Q9HCK0 441 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 SLC39A1Q9NY26 324 aa13.46□□□□□ -0.25
VIPAS39-208ENST00000556412 A0A1W2PNU3 283 aaPredicted RBP13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 PPP6CO00743 305 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 OR7A17O14581 309 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 POLR1CO15160 346 aaPredicted RBP13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 PRAMEF4O60810 478 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 CCR10P46092 362 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 VSX2P58304 361 aaPredicted RBP13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 GABREP78334 506 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 PRAMEF9Q5VWM5 478 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 FRMPD2BQ6IN97 320 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 FBXO42Q6P3S6 717 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 CACTIN-AS1Q8N1I8 211 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 DNAJC22Q8N4W6 341 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 RERGQ96A58 199 aaPredicted RBP13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 PTCD3Q96EY7 689 aaKnown RBP13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 GATA5Q9BWX5 397 aaPredicted RBP13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 C1QTNF3Q9BXJ4 246 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 SHCBP1LQ9BZQ2 653 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 APMAPQ9HDC9 416 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 GEMIN8Q9NWZ8 242 aaKnown RBP13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 SIDT1Q9NXL6 827 aaKnown RBP13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 PLCL2Q9UPR0 1127 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 KLK4Q9Y5K2 254 aa13.46□□□□□ -0.26
VIPAS39-208ENST00000556412 GOLGA4Q13439 2230 aaKnown RBP13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms