RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 PTGR2Q8N8N7 351 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-218ENST00000555213 C19orf47Q8N9M1 422 aaKnown RBP10.5□□□□□ -0.73
SHMT2-218ENST00000555213 LMNTD1Q8N9Z9 388 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 OR2L3Q8NG85 312 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 KLHL6Q8WZ60 621 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 N4BP2L2Q92802 583 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-218ENST00000555213 ESAMQ96AP7 390 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 THOC1Q96FV9 657 aaKnown RBP10.5□□□□□ -0.73
SHMT2-218ENST00000555213 TCTN2Q96GX1 697 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 SLC41A2Q96JW4 573 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 CNDP1Q96KN2 507 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 NRTNQ99748 197 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 HAUS8Q9BT25 410 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 ACAT2Q9BWD1 397 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 ZBTB26Q9HCK0 441 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 PDE7BQ9NP56 450 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 ABCF3Q9NUQ8 709 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 SEMA5BQ9P283 1151 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 ANKMY1Q9P2S6 941 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 TAC3Q9UHF0 121 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 ZDHHC2Q9UIJ5 367 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 TMCO1Q9UM00 188 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 WASF3Q9UPY6 502 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 BTRCQ9Y297 605 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 PCDHGA8Q9Y5G5 932 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 AK5Q9Y6K8 562 aa10.5□□□□□ -0.73
SHMT2-218ENST00000555213 IGHV5-51A0A0C4DH38 117 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 A0A1B0GTL3 188 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 SLC9B1P1A6NJY1 282 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 STX16-NPEPL1H3BU86 382 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 AGRPO00253 132 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 NDUFAB1O14561 156 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 STX16O14662 325 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 NEFHP12036 1026 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 GFAPP14136 432 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 ST6GAL1P15907 406 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 HRH2P25021 359 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 PSMB5P28074 263 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 PEBP1P30086 187 aaKnown RBP10.49□□□□□ -0.73
SHMT2-218ENST00000555213 MAPK10P53779 464 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 HERVK_113P63132 956 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 FOXM1Q08050 763 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 TUBB3Q13509 450 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 NAE1Q13564 534 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 RCN2Q14257 317 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 ICE2Q659A1 982 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 SULT1C3Q6IMI6 304 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 SUSD1Q6UWL2 747 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 SPATA21Q7Z572 469 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 C17orf64Q86WR6 236 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 MARCH9Q86YJ5 346 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 SLC22A9Q8IVM8 553 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 ZNF781Q8N8C0 355 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 PDPRQ8NCN5 879 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 PPFIBP2Q8ND30 876 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 C10orf82Q8WW14 230 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 RHBDF1Q96CC6 855 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 CCDC126Q96EE4 140 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 NSUN5Q96P11 429 aaKnown RBP10.49□□□□□ -0.73
SHMT2-218ENST00000555213 TRAPPC9Q96Q05 1148 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 TEFMQ96QE5 360 aaKnown RBP10.49□□□□□ -0.73
SHMT2-218ENST00000555213 MIPEPQ99797 713 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 ERVK-6Q9BXR3 956 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 ASPSCR1Q9BZE9 553 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 TWSG1Q9GZX9 223 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 ATG10Q9H0Y0 220 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 MRPS30Q9NP92 439 aaKnown RBP10.49□□□□□ -0.73
SHMT2-218ENST00000555213 THSD1Q9NS62 852 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 SLC39A1Q9NY26 324 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 ZNF225Q9UK10 706 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-218ENST00000555213 ANKRD12Q6UB98 2062 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 UNC13CQ8NB66 2214 aa10.49□□□□□ -0.73
SHMT2-218ENST00000555213 A0A1W2PPV9 198 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 POLR1CO15160 346 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 SMIM24O75264 130 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 H2AFYO75367 372 aaKnown RBP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 TNFSF15O95150 251 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 RPS17P08708 135 aaKnown RBP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 HGFP14210 728 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 PVRP15151 417 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 ALOX15P16050 662 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 MAGP20916 626 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 GGT5P36269 586 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 ALDH18A1P54886 795 aaKnown RBP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 CDH13P55290 713 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 SH3BP2P78314 561 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 PRDX1Q06830 199 aaKnown RBP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 GALNT1Q10472 559 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 IL11RAQ14626 422 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 RTP5Q14D33 572 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 SETDB1Q15047 1291 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 PCBP2Q15366 365 aaKnown RBP eCLIP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 UGT3A2Q3SY77 523 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 ZC3H12BQ5HYM0 836 aaKnown RBP10.48□□□□□ -0.73
SHMT2-218ENST00000555213 DCAF12Q5T6F0 453 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 IGF2-ASQ6U949 168 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 LCTLQ6UWM7 567 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 CEACAM20Q6UY09 585 aa10.48□□□□□ -0.73
SHMT2-218ENST00000555213 FRMD7Q6ZUT3 714 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms