RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PKP4Q99569 1192 aa13.98□□□□□ -0.17
SHMT2-208ENST00000553868 TMEM79Q9BSE2 394 aa13.98□□□□□ -0.17
SHMT2-208ENST00000553868 RAB11FIP5Q9BXF6 653 aa13.98□□□□□ -0.17
SHMT2-208ENST00000553868 MID1IP1Q9NPA3 183 aa13.98□□□□□ -0.17
SHMT2-208ENST00000553868 STOX2Q9P2F5 926 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-208ENST00000553868 MARCOQ9UEW3 520 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-208ENST00000553868 USH1CQ9Y6N9 552 aa13.98□□□□□ -0.17
SHMT2-208ENST00000553868 COLEC10Q9Y6Z7 277 aa13.98□□□□□ -0.17
SHMT2-208ENST00000553868 LRRC14BA6NHZ5 514 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 TRPC5OSA6NMA1 111 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 HDAC3O15379 428 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 WDR47O94967 919 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 CHEK2O96017 543 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 ALOX15P16050 662 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-208ENST00000553868 CCND1P24385 295 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 RPL10P27635 214 aaKnown RBP13.97□□□□□ -0.17
SHMT2-208ENST00000553868 SLC5A2P31639 672 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 ARRB2P32121 409 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 SLC6A12P48065 614 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 ARFIP2P53365 341 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 CDH13P55290 713 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 AGTRAPQ6RW13 159 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 MBOAT1Q6ZNC8 495 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 GPRIN3Q6ZVF9 776 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 GOLGA7Q7Z5G4 137 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 CLYBLQ8N0X4 340 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 SNX31Q8N9S9 440 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 SPDYE1Q8NFV5 336 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-208ENST00000553868 GPBAR1Q8TDU6 330 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 STON2Q8WXE9 905 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 NSUN5Q96P11 429 aaKnown RBP13.97□□□□□ -0.17
SHMT2-208ENST00000553868 FERD3LQ96RJ6 166 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 TMEM168Q9H0V1 697 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 SEMA4BQ9NPR2 832 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-208ENST00000553868 ACSS2Q9NR19 701 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 IMP3Q9NV31 184 aaKnown RBP13.97□□□□□ -0.17
SHMT2-208ENST00000553868 DNAJC11Q9NVH1 559 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 PNPOQ9NVS9 261 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 DCTN4Q9UJW0 460 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 PLEKHM1Q9Y4G2 1056 aa13.97□□□□□ -0.17
SHMT2-208ENST00000553868 A0A0G2JND7 137 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 A1L4Q6 167 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 CPED1A4D0V7 1026 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 OR5K4A6NMS3 321 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 MATN2O00339 956 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 ESRRBO95718 433 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 SLC16A8O95907 504 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 ENO1P06733 434 aaKnown RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 FGF4P08620 206 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 RNF224P0DH78 156 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 MTHFD1P11586 935 aaKnown RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 JUNDP17535 347 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 COL8A1P27658 744 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 ARL1P40616 181 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 CCNG1P51959 295 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 PDX1P52945 283 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 CDC16Q13042 620 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 PTCHD3Q3KNS1 767 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 CAPN13Q6MZZ7 669 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 GUSBP11Q6P575 273 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 SYTL1Q8IYJ3 562 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 SDR16C5Q8N3Y7 309 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 OR5AR1Q8NGP9 310 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 OR56A3Q8NH54 315 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 RFWD2Q8NHY2 731 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 WDR36Q8NI36 951 aaKnown RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 AGAP11Q8TF27 550 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 C10orf82Q8WW14 230 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 ESAMQ96AP7 390 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 CXorf40BQ96DE9 158 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 THOC1Q96FV9 657 aaKnown RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 INSM2Q96T92 566 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 SHCBP1LQ9BZQ2 653 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 NOL11Q9H8H0 719 aaKnown RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 IPPKQ9H8X2 491 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 PRDM8Q9NQV8 689 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 DNAJC28Q9NX36 388 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 TBC1D29Q9UFV1 150 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 APOBEC3BQ9UH17 382 aaKnown RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 ZDHHC2Q9UIJ5 367 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 TDRKHQ9Y2W6 561 aaKnown RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 TRAF6Q9Y4K3 522 aa13.96□□□□□ -0.17
SHMT2-208ENST00000553868 SETD2Q9BYW2 2564 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-208ENST00000553868 EBAG9O00559 213 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 HGSO14964 777 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-208ENST00000553868 AZIN1O14977 448 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 SCAMP1O15126 338 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 PIAS2O75928 621 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 DCTN3O75935 186 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 CSF2P04141 144 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 EBLN1P0CF75 366 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 F3P13726 295 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 NME1P15531 152 aaKnown RBP13.95□□□□□ -0.18
SHMT2-208ENST00000553868 TSPAN8P19075 237 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 IMPA1P29218 277 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 PNLIPRP1P54315 467 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 AQP5P55064 265 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 HNRNPKP61978 463 aaKnown RBP eCLIP13.95□□□□□ -0.18
SHMT2-208ENST00000553868 SH3BP2P78314 561 aa13.95□□□□□ -0.18
SHMT2-208ENST00000553868 NAE1Q13564 534 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms