RNA–Protein interactions for RNA: ENST00000551981.5

CHMP1A-210, Transcript of charged multivesicular body protein 1A, human

TSL 2

Gene CHMP1A, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-210	ENST00000551981	RUVBL2	Q9Y230	463 aa	Known RBP	13.46	□□□□□ -0.25
CHMP1A-210	ENST00000551981	HEATR5B	Q9P2D3	2071 aa		13.46	□□□□□ -0.26
CHMP1A-210	ENST00000551981	SCN2A	Q99250	2005 aa		13.46	□□□□□ -0.26
CHMP1A-210	ENST00000551981	KRT87P	A6NCN2	255 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981		A8MUI8	341 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	CD3EAP	O15446	510 aa	Known RBP	13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	TTI1	O43156	1089 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	NDUFS3	O75489	264 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	CCNDBP1	O95273	360 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	FDFT1	P37268	417 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	HKDC1	Q2TB90	917 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ANKRD20A4	Q4UJ75	823 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	KRTCAP3	Q53RY4	240 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ZC3H7A	Q8IWR0	971 aa	Known RBP	13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	MPP5	Q8N3R9	675 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	TC2N	Q8N9U0	490 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	THAP3	Q8WTV1	239 aa	Predicted RBP	13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	CHTF18	Q8WVB6	975 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	SMPDL3A	Q92484	453 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	IMMP1L	Q96LU5	166 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ZNF354B	Q96LW1	612 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	P2RY12	Q9H244	342 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	C19orf25	Q9UFG5	118 aa	Predicted RBP	13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	TINAG	Q9UJW2	476 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	R3HDM2	Q9Y2K5	976 aa	Known RBP	13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981	PCDHGB6	Q9Y5F9	930 aa		13.45	□□□□□ -0.26
CHMP1A-210	ENST00000551981		A0A0A6YYC8	382 aa	Predicted RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ZNF839	A8K0R7	811 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	BTNL10	A8MVZ5	291 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	FAM227A	F5H4B4	570 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981		I3L1I5	382 aa	Predicted RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	CYC1	P08574	325 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	EZR	P15311	586 aa	Known RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	RPS3	P23396	243 aa	Known RBP eCLIP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	STIP1	P31948	543 aa	Known RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	AVPR1B	P47901	424 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	YBX1	P67809	324 aa	Known RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	KLF1	Q13351	362 aa	Predicted RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	TSTA3	Q13630	321 aa	Predicted RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	FASTK	Q14296	549 aa	Known RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	NDUFA9	Q16795	377 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	LRRC8B	Q6P9F7	803 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	PEX26	Q7Z412	305 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	CDH24	Q86UP0	819 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	PAQR7	Q86WK9	346 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	CEP97	Q8IW35	865 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	LRRC57	Q8N9N7	239 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	OR9A1P	Q8NGU1	263 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	GPR137	Q96N19	417 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ETNK1	Q9HBU6	452 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	FAM114A2	Q9NRY5	505 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	MARCH4	Q9P2E8	410 aa	Predicted RBP	13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	AMFR	Q9UKV5	643 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	DUSP10	Q9Y6W6	482 aa		13.44	□□□□□ -0.26
CHMP1A-210	ENST00000551981	MIF4GD	A9UHW6	222 aa	Known RBP	13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	SEC24D	O94855	1032 aa	Predicted RBP	13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	IFNB1	P01574	187 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ATP5D	P30049	168 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	HSD17B2	P37059	387 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	GRIA1	P42261	906 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	EIF3B	P55884	814 aa	Known RBP	13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ALDH6A1	Q02252	535 aa	Known RBP	13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	FAM53B	Q14153	422 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ARHGAP19	Q14CB8	494 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	SYT16	Q17RD7	645 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	BTBD16	Q32M84	506 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	PCID2	Q5JVF3	399 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ACER2	Q5QJU3	275 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	MFSD4B	Q5TF39	518 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	PLAG1	Q6DJT9	500 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	SPNS3	Q6ZMD2	512 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981		Q6ZPB1	254 aa	Predicted RBP	13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	SPPL2C	Q8IUH8	684 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	BEST3	Q8N1M1	668 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	OTUD6B	Q8N6M0	293 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ADAMTS18	Q8TE60	1221 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	C14orf79	Q96F83	325 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	OR2A5	Q96R48	311 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	SPOCK3	Q9BQ16	436 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	UTP23	Q9BRU9	249 aa	Known RBP	13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	CHRAC1	Q9NRG0	131 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	TSR3	Q9UJK0	312 aa	Known RBP	13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ZNF835	Q9Y2P0	537 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	MEMO1	Q9Y316	297 aa		13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981	EPN1	Q9Y6I3	576 aa	Predicted RBP	13.43	□□□□□ -0.26
CHMP1A-210	ENST00000551981		A0A0U1RQJ8	604 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	GRID2IP	A4D2P6	1211 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981		H3BMM5	538 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	C19orf84	I3L1E1	186 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	PFDN6	O15212	129 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	FOXS1	O43638	330 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	MATN4	O95460	622 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	APRT	P07741	180 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	ERG	P11308	486 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	CD46	P15529	392 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	PTMS	P20962	102 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	EEF1D	P29692	281 aa	Known RBP	13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	MAT1A	Q00266	395 aa	Known RBP	13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	RELA	Q04206	551 aa		13.42	□□□□□ -0.26
CHMP1A-210	ENST00000551981	PRDX1	Q06830	199 aa	Known RBP	13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms