RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 BRIX1Q8TDN6 353 aaKnown RBP12.22□□□□□ -0.45
PTCH1-218ENST00000548945 TAAR6Q96RI8 345 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 ZNF700Q9H0M5 742 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 ABI3Q9P2A4 366 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 PTGFRNQ9P2B2 879 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 COPG2Q9UBF2 871 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 RUVBL1Q9Y265 456 aaKnown RBP12.22□□□□□ -0.45
PTCH1-218ENST00000548945 VPS9D1Q9Y2B5 631 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 ZKSCAN5Q9Y2L8 839 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 KLF2Q9Y5W3 355 aaPredicted RBP12.22□□□□□ -0.45
PTCH1-218ENST00000548945 GTF3C1Q12789 2109 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 C2CD3Q4AC94 2353 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 IGKV1-8A0A0C4DH67 115 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 A0A0U1RQJ8 604 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 KRT87PA6NCN2 255 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 ARHGEF33A8MVX0 844 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 WFS1O76024 890 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 VAPBO95292 243 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 CRYABP02511 175 aaKnown RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 HEXBP07686 556 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 ANXA5P08758 320 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 EZRP15311 586 aaKnown RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 ELAVL4P26378 380 aaKnown RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 FMO4P31512 558 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 YBX1P67809 324 aaKnown RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 CRADDP78560 199 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 ABATP80404 500 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 PRDX1Q06830 199 aaKnown RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 SNX1Q13596 522 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 FAM53BQ14153 422 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 NAA30Q147X3 362 aaPredicted RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 SP5Q6BEB4 398 aaPredicted RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 ZNF425Q6IV72 752 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 MTFR2Q6P444 385 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 TMEM205Q6UW68 189 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 NEK10Q6ZWH5 1172 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 PRUNE1Q86TP1 453 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 LRRC8AQ8IWT6 810 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 OTUD6BQ8N6M0 293 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 SIRT6Q8N6T7 355 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 FBXO15Q8NCQ5 510 aaPredicted RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 RERGQ96A58 199 aaPredicted RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 MOCOSQ96EN8 888 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 MMABQ96EY8 250 aaPredicted RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 MAGEB10Q96LZ2 347 aaPredicted RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 OR2A5Q96R48 311 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 DESI2Q9BSY9 194 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 ACAT2Q9BWD1 397 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 TSGA10Q9BZW7 698 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 DRC3Q9H069 523 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 KLHL42Q9P2K6 505 aa12.21□□□□□ -0.45
PTCH1-218ENST00000548945 NCOA6Q14686 2063 aaPredicted RBP12.21□□□□□ -0.45
PTCH1-218ENST00000548945 CSMD2Q7Z408 3487 aa12.21□□□□□ -0.46
PTCH1-218ENST00000548945 SCN3AQ9NY46 2000 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 ARHGAP10A1A4S6 786 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 PRSS44E7EML9 344 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 FOXS1O43638 330 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 NIPSNAP2O75323 286 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 CATP04040 527 aaKnown RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 ZSCAN5DPP0CG00 497 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 TPSB2P20231 275 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 CHRM3P20309 590 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 OGNP20774 298 aaKnown RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 PNLIPRP1P54315 467 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 BASP1P80723 227 aaKnown RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 EEF1A2Q05639 463 aaKnown RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 PCOLCEQ15113 449 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 SIX1Q15475 284 aaPredicted RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 TPSAB1Q15661 275 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 HKDC1Q2TB90 917 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 ICE2Q659A1 982 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 KIAA0930Q6ICG6 404 aaPredicted RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 LRRC8BQ6P9F7 803 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 SUSD1Q6UWL2 747 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 SRRM1Q8IYB3 904 aaKnown RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 SUN3Q8TAQ9 357 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 MFSD3Q96ES6 412 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 EBNA1BP2Q99848 306 aaKnown RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 TUBB6Q9BUF5 446 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 PLA2G3Q9NZ20 509 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 STOX2Q9P2F5 926 aaPredicted RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 SUCOQ9UBS9 1254 aaKnown RBP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 TEKT2Q9UIF3 430 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 SOX13Q9UN79 622 aa12.2□□□□□ -0.46
PTCH1-218ENST00000548945 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.2□□□□□ -0.46
PTCH1-218ENST00000548945 HIVEP1P15822 2718 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 SETD2Q9BYW2 2564 aaPredicted RBP12.19□□□□□ -0.46
PTCH1-218ENST00000548945 RASAL1O95294 804 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 WDPCPO95876 746 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 UQCRHP07919 91 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 PRF1P14222 555 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 PAMP19021 973 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 MGAT1P26572 445 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 KCNK10P57789 538 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 RPS6KA1Q15418 735 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 NDUFA9Q16795 377 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 LONRF1Q17RB8 773 aa12.19□□□□□ -0.46
PTCH1-218ENST00000548945 KLHL38Q2WGJ6 581 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms