RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 OR2A25A4D2G3 310 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 NPIPB8E9PQR5 432 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 HDAC3O15379 428 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 ITM2AO43736 263 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 CHRNGP07510 517 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 ALOX15P16050 662 aaPredicted RBP15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 ALDH4A1P30038 563 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 HMOX2P30519 316 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 AHRP35869 848 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 ARL1P40616 181 aaPredicted RBP15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 PIK3CBP42338 1070 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 ARFIP1P53367 373 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 RPS15AP62244 130 aaKnown RBP15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 E2F1Q01094 437 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 TRA2AQ13595 282 aaKnown RBP eCLIP15.4■□□□□ 0.065e-8■■■□□ 15.5
PRPF40A-212ENST00000545856 DOC2AQ14183 400 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 FBXO48Q5FWF7 155 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 SH2D4BQ5SQS7 431 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 STPG1Q5TH74 334 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 MED27Q6P2C8 311 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 GUSBP11Q6P575 273 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 TMEM71Q6P5X7 295 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 CYB5D1Q6P9G0 228 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 PIP4P1Q86T03 277 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 GBP7Q8N8V2 638 aaPredicted RBP15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 METTL6Q8TCB7 284 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 NETO1Q8TDF5 533 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 CCDC3Q9BQI4 270 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 PLCD4Q9BRC7 762 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 TRIM55Q9BYV6 548 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 EPN3Q9H201 632 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 RHBGQ9H310 441 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 MRGBPQ9NV56 204 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 BTBD3Q9Y2F9 522 aa15.4■□□□□ 0.06
PRPF40A-212ENST00000545856 CPED1A4D0V7 1026 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 C4orf47A7E2U8 309 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 TMX2-CTNND1H3BSU7 103 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 UBFD1O14562 309 aaKnown RBP15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 CAPN5O15484 640 aaPredicted RBP15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 B4GAT1O43505 415 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 VPS4BO75351 444 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 CDH1P12830 882 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 TYRP1P17643 537 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 CD1CP29017 333 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 ARRB2P32121 409 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 GRIA3P42263 894 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 INHBCP55103 352 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 ERVPABLB-1P60509 514 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 IRX1P78414 480 aaPredicted RBP15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 CSTF3Q12996 717 aaKnown RBP15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 IFT88Q13099 833 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 CES4AQ5XG92 561 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 FRG2Q64ET8 278 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 LETMD1Q6P1Q0 360 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 TMIGD1Q6UXZ0 262 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 SYVN1Q86TM6 617 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 PAQR7Q86WK9 346 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 ZNF781Q8N8C0 355 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 OR4D9Q8NGE8 314 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 USP7Q93009 1102 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 TCTN2Q96GX1 697 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 FRG2BQ96QU4 278 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 DPH7Q9BTV6 452 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 ACAT2Q9BWD1 397 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 C20orf27Q9GZN8 174 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 ABCG4Q9H172 646 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 LRRN3Q9H3W5 708 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 ELOVL6Q9H5J4 265 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 BRF2Q9HAW0 419 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 SLCO1B3Q9NPD5 702 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 ENAMQ9NRM1 1142 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 NMRK1Q9NWW6 199 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 GEMIN8Q9NWZ8 242 aaKnown RBP15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 ZNF225Q9UK10 706 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 BTRCQ9Y297 605 aa15.39■□□□□ 0.05
PRPF40A-212ENST00000545856 FOXE1O00358 373 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 NTN3O00634 580 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 ULK1O75385 1050 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 LYPLA1O75608 230 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 OR4F21O95013 312 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 ZBTB11O95625 1053 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 CAPN1P07384 714 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 CSRP1P21291 193 aaKnown RBP15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 CDH3P22223 829 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 ACADVLP49748 655 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 GYS2P54840 703 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 OR1D5P58170 312 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 CSNK1G2P78368 415 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 SLBPQ14493 270 aaKnown RBP eCLIP15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 ZC3H12BQ5HYM0 836 aaKnown RBP15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 MANEAQ5SRI9 462 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 IRGCQ6NXR0 463 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 FAM47EQ6ZV65 393 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 RNF44Q7L0R7 432 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 ZNF761Q86XN6 746 aaPredicted RBP15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 SLC6A20Q9NP91 592 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 KLHL14Q9P2G3 628 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 ZDHHC2Q9UIJ5 367 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 CEP250Q9BV73 2442 aa15.38■□□□□ 0.05
PRPF40A-212ENST00000545856 PIEZO1Q92508 2521 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms