RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 IGKV1-8A0A0C4DH67 115 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ARHGEF33A8MVX0 844 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 H0YGG7 62 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 AP3B1O00203 1094 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 E2F3O00716 465 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 FFAR3O14843 346 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 GPR42O15529 346 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 AVILO75366 819 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 HPP00738 406 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 FGGP02679 453 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 F7P08709 466 aaPredicted RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 ZGLP1P0C6A0 271 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ERGP11308 486 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PKMP14618 531 aaKnown RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 CHRM3P20309 590 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 CMPK1P30085 196 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 DCTP40126 519 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 TSFMP43897 325 aaKnown RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 CARSP49589 748 aaKnown RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 ARF3P61204 181 aaPredicted RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 PRR20EP86478 221 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PRR20CP86479 221 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PRR20DP86480 221 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PRR20BP86481 221 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PRR20AP86496 221 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 OCA2Q04671 838 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ZNF169Q14929 603 aaPredicted RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 TRIP13Q15645 432 aaPredicted RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 MUM1Q2TAK8 710 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 KLHL38Q2WGJ6 581 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ANKRD20A4Q4UJ75 823 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 IRAK1BP1Q5VVH5 260 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ATG9BQ674R7 924 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 MRNIPQ6NTE8 343 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PRMT9Q6P2P2 845 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ISLR2Q6UXK2 745 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 C4orf22Q6V702 233 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 CENPUQ71F23 418 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 GSTA5Q7RTV2 222 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ST6GALNAC3Q8NDV1 305 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 MAGEC3Q8TD91 643 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 GRHL3Q8TE85 626 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PSMF1Q92530 271 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 CNDP1Q96KN2 507 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 LMF1Q96S06 567 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PKP4Q99569 1192 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 SLC30A3Q99726 388 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ZFYVE21Q9BQ24 234 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 PLCD4Q9BRC7 762 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 TRIM56Q9BRZ2 755 aaKnown RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 ZNF160Q9HCG1 818 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 AGPAT4Q9NRZ5 378 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 ZNF282Q9UDV7 671 aaPredicted RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 C3orf18Q9UK00 162 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 SOX13Q9UN79 622 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 SPENQ96T58 3664 aaKnown RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 POLEQ07864 2286 aa8.06□□□□□ -1.12
USP28-215ENST00000545608 MDC1Q14676 2089 aaKnown RBP8.06□□□□□ -1.12
USP28-215ENST00000545608 CNTRLQ7Z7A1 2325 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 H3BMM5 538 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 MYO1CO00159 1063 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 MAP2K7O14733 419 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 CEP104O60308 925 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 PSIP1O75475 530 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 ESR1P03372 595 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 COX6A1P12074 109 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 ACPPP15309 386 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 TPSB2P20231 275 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 OGNP20774 298 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 FBLP22087 321 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 ATP5DP30049 168 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 VPS41P49754 854 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 EMP2P54851 167 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 ADARP55265 1226 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 SNRPNP63162 240 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 CDK16Q00536 496 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 PRDX1Q06830 199 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 CDC16Q13042 620 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 MFAP5Q13361 173 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 TSTA3Q13630 321 aaPredicted RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 KCNJ11Q14654 390 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 TPSAB1Q15661 275 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 HKDC1Q2TB90 917 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 ANKRD22Q5VYY1 191 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 KIAA0930Q6ICG6 404 aaPredicted RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 ZNF425Q6IV72 752 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 NEPROQ6NW34 567 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 CYHR1Q6ZMK1 362 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 CAND1Q86VP6 1230 aaKnown RBP8.05□□□□□ -1.12
USP28-215ENST00000545608 PAQR7Q86WK9 346 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 REXO1L1PQ8IX06 675 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 LINC00528Q8N1L1 170 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 ARHGEF39Q8N4T4 335 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 PRELID2Q8N945 189 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 PPFIBP2Q8ND30 876 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 FAR1Q8WVX9 515 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 MAIP1Q8WWC4 291 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 SMPDL3AQ92484 453 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 HPS1Q92902 700 aa8.05□□□□□ -1.12
USP28-215ENST00000545608 VPS50Q96JG6 964 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms