RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 RPS13P62277 151 aaKnown RBP15.77■□□□□ 0.12
COL4A1-204ENST00000543140 PPP1R8Q12972 351 aaKnown RBP15.77■□□□□ 0.12
COL4A1-204ENST00000543140 PON2Q15165 354 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 ZIK1Q3SY52 487 aaPredicted RBP15.77■□□□□ 0.12
COL4A1-204ENST00000543140 SLC36A3Q495N2 470 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 THEMIS2Q5TEJ8 643 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF621Q6ZSS3 439 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 CALHM3Q86XJ0 350 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF786Q8N393 782 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 DNAJC5GQ8N7S2 189 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 PNPT1Q8TCS8 783 aaKnown RBP15.77■□□□□ 0.12
COL4A1-204ENST00000543140 HIC2Q96JB3 615 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 NRTNQ99748 197 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 PLAGL1Q9UM63 463 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 FADS3Q9Y5Q0 445 aa15.77■□□□□ 0.12
COL4A1-204ENST00000543140 CCDC160A6NGH7 325 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 SCELO95171 688 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 SERPINA1P01009 418 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 GBAP04062 536 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 ANXA4P09525 319 aaPredicted RBP15.76■□□□□ 0.11
COL4A1-204ENST00000543140 RAE1P78406 368 aaKnown RBP15.76■□□□□ 0.11
COL4A1-204ENST00000543140 DPTQ07507 201 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 RUNX3Q13761 415 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 PDGFRLQ15198 375 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 HKDC1Q2TB90 917 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 CYBRD1Q53TN4 286 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 ZNF765Q7L2R6 523 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 STK32CQ86UX6 486 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 DHRSXQ8N5I4 330 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 DNAJB8Q8NHS0 232 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 NELL1Q92832 810 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 NMD3Q96D46 503 aaKnown RBP15.76■□□□□ 0.11
COL4A1-204ENST00000543140 CHFRQ96EP1 664 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 FCRL1Q96LA6 429 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 IL17FQ96PD4 163 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 HHIPQ96QV1 700 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 ZNF639Q9UID6 485 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 SMIM31A0A1B0GVY4 71 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 IGLON5A6NGN9 336 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 FAM220BPB1ANY3 271 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 SAP18O00422 153 aaKnown RBP15.76■□□□□ 0.11
COL4A1-204ENST00000543140 MYO1DO94832 1006 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 KAT7O95251 611 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 CST1P01037 141 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 PCCBP05166 539 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 MAPK9P45984 424 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 WNT3P56703 355 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 MTAPQ13126 283 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 SHHQ15465 462 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 DUOXA1Q1HG43 343 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 TMEM52BQ4KMG9 183 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 TTC33Q6PID6 262 aaPredicted RBP15.76■□□□□ 0.11
COL4A1-204ENST00000543140 KIAA1958Q8N8K9 716 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 OR9A1PQ8NGU1 263 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 SH3KBP1Q96B97 665 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 KXD1Q9BQD3 176 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 PAPOLBQ9NRJ5 636 aaKnown RBP15.76■□□□□ 0.11
COL4A1-204ENST00000543140 DCAF13Q9NV06 445 aaKnown RBP15.76■□□□□ 0.11
COL4A1-204ENST00000543140 GDE1Q9NZC3 331 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 COL4A3Q01955 1670 aa15.76■□□□□ 0.11
COL4A1-204ENST00000543140 GNG14A0A1W2PPG7 69 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 C1QTNF3-AMACRE9PGA6 284 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 ACPPP15309 386 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 ENGP17813 658 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 MYF6P23409 242 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 SRSF11Q05519 484 aaKnown RBP15.75■□□□□ 0.11
COL4A1-204ENST00000543140 MAP7Q14244 749 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 SLBPQ14493 270 aaKnown RBP eCLIP15.75■□□□□ 0.11
COL4A1-204ENST00000543140 MED27Q6P2C8 311 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 DSG4Q86SJ6 1040 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 GPR149Q86SP6 731 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 HEATR4Q86WZ0 1026 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 HS3ST5Q8IZT8 346 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 CLEC4FQ8N1N0 589 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 TRIML2Q8N7C3 387 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 C11orf24Q96F05 449 aaPredicted RBP15.75■□□□□ 0.11
COL4A1-204ENST00000543140 LGR4Q9BXB1 951 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 TM7SF3Q9NS93 570 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 ASF1AQ9Y294 204 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 CFAP20Q9Y6A4 193 aaKnown RBP15.75■□□□□ 0.11
COL4A1-204ENST00000543140 RFXAPO00287 272 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 CLIC1O00299 241 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 SCN2BO60939 215 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 PCDH8O95206 1070 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 TAP2Q03519 686 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 PLCL1Q15111 1095 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 PIP5KL1Q5T9C9 394 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 ZCCHC8Q6NZY4 707 aaKnown RBP15.75■□□□□ 0.11
COL4A1-204ENST00000543140 C11orf96Q7Z7L8 435 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 GALNT10Q86SR1 603 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 KLHDC8AQ8IYD2 350 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 CPA6Q8N4T0 437 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 OR2L2Q8NH16 312 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 BRF2Q9HAW0 419 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 CLK4Q9HAZ1 481 aaKnown RBP15.75■□□□□ 0.11
COL4A1-204ENST00000543140 THAP10Q9P2Z0 257 aaPredicted RBP15.75■□□□□ 0.11
COL4A1-204ENST00000543140 SLC23A2Q9UGH3 650 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 DYRK1BQ9Y463 629 aa15.75■□□□□ 0.11
COL4A1-204ENST00000543140 GABRR3A8MPY1 467 aa15.74■□□□□ 0.11
COL4A1-204ENST00000543140 EVPLLA8MZ36 301 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms