RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 OR2A5Q96R48 311 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 HES7Q9BYE0 225 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 ETNK1Q9HBU6 452 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 CATSPERZQ9NTU4 200 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 SPATA7Q9P0W8 599 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 MKL2Q9ULH7 1088 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 MEMO1Q9Y316 297 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 PCDHGB6Q9Y5F9 930 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 MRFAP1Q9Y605 127 aa16.87■□□□□ 0.29
CLSTN3-214ENST00000542663 MTORP42345 2549 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 IGHV3-20A0A0C4DH32 117 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 P2RX6O15547 441 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 SEC24DO94855 1032 aaPredicted RBP16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 MYBL2P10244 700 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 TTPAP49638 278 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 AP2B1P63010 937 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 MAT1AQ00266 395 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 NAA25Q14CX7 972 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 SPA17Q15506 151 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 LONRF1Q17RB8 773 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 KRTAP21-3Q3LHN1 58 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 AARS2Q5JTZ9 985 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 PTRHD1Q6GMV3 140 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 H3F3CQ6NXT2 135 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 PPP1R21Q6ZMI0 780 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 LANCL3Q6ZV70 420 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 SPPL2CQ8IUH8 684 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 CCDC170Q8IYT3 715 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 BEST3Q8N1M1 668 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 MDS2Q8NDY4 140 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 GSDMBQ8TAX9 411 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 PANX3Q96QZ0 392 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 NPAS2Q99743 824 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 DRC3Q9H069 523 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 TSPAN10Q9H1Z9 355 aaPredicted RBP16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 MRPS30Q9NP92 439 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 GNPTGQ9UJJ9 305 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 ANAPC5Q9UJX4 755 aa16.86■□□□□ 0.29
CLSTN3-214ENST00000542663 GRID2IPA4D2P6 1211 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 GOLGA6L9A6NEM1 432 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 A8MUI8 341 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 KPNA5O15131 536 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 CD3EAPO15446 510 aaKnown RBP16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 ZNHIT1O43257 154 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 PHF2O75151 1096 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 VPS26AO75436 327 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 MATN4O95460 622 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 GAS8O95995 478 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 ANXA5P08758 320 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 C8orf89P0DMQ9 161 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 CAPN3P20807 821 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 RPS3P23396 243 aaKnown RBP eCLIP16.85■□□□□ 0.293e-12■□□□□ 11.2
CLSTN3-214ENST00000542663 ST13P50502 369 aaKnown RBP16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 TUBA3CQ13748 450 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 GBX1Q14549 363 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 CTSL3PQ5NE16 218 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 GARNL3Q5VVW2 1013 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 FCRLBQ6BAA4 426 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 ZNF425Q6IV72 752 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 TUBA3EQ6PEY2 450 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 OTOAQ7RTW8 1153 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 CDH24Q86UP0 819 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 PEX13Q92968 403 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 MRFAP1L1Q96HT8 127 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 MAGED4Q96JG8 741 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 SPOCK3Q9BQ16 436 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 VN1R1Q9GZP7 353 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 ENKD1Q9H0I2 346 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 CHRAC1Q9NRG0 131 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 TEKT2Q9UIF3 430 aa16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 TSR3Q9UJK0 312 aaKnown RBP16.85■□□□□ 0.29
CLSTN3-214ENST00000542663 FAM227AF5H4B4 570 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 BTBD16Q32M84 506 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 KRTCAP3Q53RY4 240 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 ACER2Q5QJU3 275 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 PLAG1Q6DJT9 500 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 CEP97Q8IW35 865 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 CHERPQ8IWX8 916 aaKnown RBP16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 OR9A1PQ8NGU1 263 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 MAGEC3Q8TD91 643 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 ATG4AQ8WYN0 398 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 SCMH1Q96GD3 660 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 CALR3Q96L12 384 aaKnown RBP16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 FOPNLQ96NB1 174 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 FRMD6Q96NE9 622 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 BIRC8Q96P09 236 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 LACRTQ9GZZ8 138 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 KLHL1Q9NR64 748 aa16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 PACSIN2Q9UNF0 486 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 REXO2Q9Y3B8 237 aaKnown RBP16.84■□□□□ 0.29
CLSTN3-214ENST00000542663 ASPDHA6ND91 283 aa16.83■□□□□ 0.28
CLSTN3-214ENST00000542663 ARHGEF33A8MVX0 844 aa16.83■□□□□ 0.28
CLSTN3-214ENST00000542663 BTNL10A8MVZ5 291 aa16.83■□□□□ 0.28
CLSTN3-214ENST00000542663 TTI1O43156 1089 aa16.83■□□□□ 0.28
CLSTN3-214ENST00000542663 MAN1A2O60476 641 aa16.83■□□□□ 0.28
CLSTN3-214ENST00000542663 PTMAP06454 111 aaKnown RBP16.83■□□□□ 0.28
CLSTN3-214ENST00000542663 EZRP15311 586 aaKnown RBP16.83■□□□□ 0.28
CLSTN3-214ENST00000542663 CYLC1P35663 651 aaPredicted RBP16.83■□□□□ 0.28
CLSTN3-214ENST00000542663 CD96P40200 585 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms