RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 RASGEF1BQ0VAM2 473 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 MTHFSDQ2M296 383 aaKnown RBP5.03□□□□□ -1.6
YBX3-210ENST00000540975 MOGAT2Q3SYC2 334 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 ZNF343Q6P1L6 599 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 KLHDC1Q8N7A1 406 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 RASGEF1AQ8N9B8 481 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 KCNE4Q8WWG9 221 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 ROBO4Q8WZ75 1007 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 PROX1Q92786 737 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 HDAC11Q96DB2 347 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 MED20Q9H944 212 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 TXNDC16Q9P2K2 825 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 KLK13Q9UKR3 277 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 MOB4Q9Y3A3 225 aa5.03□□□□□ -1.6
YBX3-210ENST00000540975 A0A087WUV0 522 aaPredicted RBP5.02□□□□□ -1.61
YBX3-210ENST00000540975 TRAV24A0A0B4J272 114 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 PI15O43692 258 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 CPT2P23786 658 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 ALDH1B1P30837 517 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 TMEM50BP56557 158 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 CALD1Q05682 793 aaKnown RBP5.02□□□□□ -1.61
YBX3-210ENST00000540975 KRT39Q6A163 491 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 PAQR6Q6TCH4 344 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 RYBPQ8N488 228 aaPredicted RBP5.02□□□□□ -1.61
YBX3-210ENST00000540975 FAM89BQ8N5H3 189 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 ANKRD13CQ8N6S4 541 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 GPATCH11Q8N954 259 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 XXYLT1Q8NBI6 393 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 PIK3R3Q92569 461 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 CFAP57Q96MR6 1250 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 RPS10P5Q9NQ39 176 aa5.02□□□□□ -1.61
YBX3-210ENST00000540975 C2CD4DB7Z1M9 353 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 RPS6KA5O75582 802 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 GSRP00390 522 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 ATP1B1P05026 303 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 LDHCP07864 332 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 MYBL1P10243 752 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 ELAVL4P26378 380 aaKnown RBP5.01□□□□□ -1.61
YBX3-210ENST00000540975 RBMS1P29558 406 aaKnown RBP5.01□□□□□ -1.61
YBX3-210ENST00000540975 UBASH3AP57075 661 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 CDH18Q13634 790 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 LY6DQ14210 128 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 TMEM132DQ14C87 1099 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 TAB1Q15750 504 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 KIF6Q6ZMV9 814 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 CATSPERDQ86XM0 798 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 Q8NBF4 154 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 PRICKLE1Q96MT3 831 aaPredicted RBP5.01□□□□□ -1.61
YBX3-210ENST00000540975 FAM218AQ96MZ4 157 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 AGAP4Q96P64 663 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 CDCA3Q99618 268 aaPredicted RBP5.01□□□□□ -1.61
YBX3-210ENST00000540975 GPATCH1Q9BRR8 931 aaKnown RBP5.01□□□□□ -1.61
YBX3-210ENST00000540975 DCTN5Q9BTE1 182 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 NYXQ9GZU5 481 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 PRDM4Q9UKN5 801 aa5.01□□□□□ -1.61
YBX3-210ENST00000540975 IGSF1Q8N6C5 1336 aa5□□□□□ -1.61
YBX3-210ENST00000540975 TP53BP1Q12888 1972 aaPredicted RBP5□□□□□ -1.61
YBX3-210ENST00000540975 URADA6NGE7 173 aa5□□□□□ -1.61
YBX3-210ENST00000540975 P4HA2O15460 535 aa5□□□□□ -1.61
YBX3-210ENST00000540975 FYNP06241 537 aa5□□□□□ -1.61
YBX3-210ENST00000540975 PTMAP06454 111 aaKnown RBP5□□□□□ -1.61
YBX3-210ENST00000540975 GATA2P23769 480 aaPredicted RBP5□□□□□ -1.61
YBX3-210ENST00000540975 SGCGQ13326 291 aa5□□□□□ -1.61
YBX3-210ENST00000540975 RAPSNQ13702 412 aa5□□□□□ -1.61
YBX3-210ENST00000540975 TRIM29Q14134 588 aa5□□□□□ -1.61
YBX3-210ENST00000540975 NONOQ15233 471 aaKnown RBP eCLIP5□□□□□ -1.61
YBX3-210ENST00000540975 CST9LP1Q5W188 147 aa5□□□□□ -1.61
YBX3-210ENST00000540975 CES4AQ5XG92 561 aa5□□□□□ -1.61
YBX3-210ENST00000540975 FRRS1Q6ZNA5 592 aa5□□□□□ -1.61
YBX3-210ENST00000540975 FAM43BQ6ZT52 329 aaPredicted RBP5□□□□□ -1.61
YBX3-210ENST00000540975 TLK2Q86UE8 772 aa5□□□□□ -1.61
YBX3-210ENST00000540975 SPEM1Q8N4L4 309 aa5□□□□□ -1.61
YBX3-210ENST00000540975 PI4KAP1Q8N8J0 262 aa5□□□□□ -1.61
YBX3-210ENST00000540975 METTL21AQ8WXB1 218 aa5□□□□□ -1.61
YBX3-210ENST00000540975 SPSB1Q96BD6 273 aa5□□□□□ -1.61
YBX3-210ENST00000540975 HOXD1Q9GZZ0 328 aa5□□□□□ -1.61
YBX3-210ENST00000540975 TEX10Q9NXF1 929 aaPredicted RBP5□□□□□ -1.61
YBX3-210ENST00000540975 MUTYHQ9UIF7 546 aa5□□□□□ -1.61
YBX3-210ENST00000540975 IGHV3OR16-10A0A075B7F0 116 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 PI4K2BG5E9Z4 385 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 CCL24O00175 119 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 CEACAM4O75871 244 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 TLX1P31314 330 aaPredicted RBP4.99□□□□□ -1.61
YBX3-210ENST00000540975 OR3A2P47893 321 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 PPP5CP53041 499 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 SLC8A3P57103 927 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 OPCMLQ14982 345 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 KRT80Q6KB66 452 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 NOTUMQ6P988 496 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 CTR9Q6PD62 1173 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 KRT74Q7RTS7 529 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 MFN1Q8IWA4 741 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 OR5T2Q8NGG2 359 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 C2orf48Q96LS8 159 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 ACTL8Q9H568 366 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 B3GAT2Q9NPZ5 323 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 NKIRAS2Q9NYR9 191 aa4.99□□□□□ -1.61
YBX3-210ENST00000540975 PA2G4Q9UQ80 394 aaKnown RBP4.99□□□□□ -1.61
YBX3-210ENST00000540975 LOC105371242A0A075B767 164 aa4.98□□□□□ -1.61
YBX3-210ENST00000540975 TRBV4-1A0A0J9YWV2 114 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms