RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 VCPKMTQ9H867 229 aa3.26□□□□□ -1.89
USP48-215ENST00000534705 CCDC177Q9NQR7 707 aaPredicted RBP3.26□□□□□ -1.89
USP48-215ENST00000534705 TCP11L1Q9NUJ3 509 aa3.26□□□□□ -1.89
USP48-215ENST00000534705 TRMT1Q9NXH9 659 aaKnown RBP3.26□□□□□ -1.89
USP48-215ENST00000534705 NYAP2Q9P242 653 aa3.26□□□□□ -1.89
USP48-215ENST00000534705 MARCH4Q9P2E8 410 aaPredicted RBP3.26□□□□□ -1.89
USP48-215ENST00000534705 REV3LO60673 3130 aa3.26□□□□□ -1.89
USP48-215ENST00000534705 NEDD4P46934 1319 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 A0A1B0GVY2 172 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 CDRT15L2A8MXV6 281 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 WDR46O15213 610 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 OGG1O15527 345 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 EDIL3O43854 480 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 NEMFO60524 1076 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 NMT2O60551 498 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 SLU7O95391 586 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 INHBAP08476 426 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 CLTBP09497 229 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 CSH1P0DML2 217 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 CSH2P0DML3 217 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 GCFC2P16383 781 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 PAX7P23759 505 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 NFKBIAP25963 317 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 EEF1DP29692 281 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 ARCN1P48444 511 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 NR2C2P49116 596 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 FNTAP49354 379 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 GPR143P51810 404 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 KRTAP10-3P60369 221 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 UBXN1Q04323 297 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 PPP2R5CQ13362 524 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 MED22Q15528 200 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 LRIF1Q5T3J3 769 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 NSUN5P2Q63ZY6 315 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 FAM109BQ6ICB4 259 aaPredicted RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 RPUSD3Q6P087 351 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 ZNF449Q6P9G9 518 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 CWC27Q6UX04 472 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 LRRC31Q6UY01 552 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 CFAP77Q6ZQR2 320 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 TPRG1Q6ZUI0 275 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 SLC26A9Q7LBE3 791 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 GPR142Q7Z601 462 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 EMC1Q8N766 993 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 AVL9Q8NBF6 648 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 APPL2Q8NEU8 664 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 RDM1Q8NG50 284 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 KCNG4Q8TDN1 519 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 UTP15Q8TED0 518 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 TCP11Q8WWU5 503 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 TAF15Q92804 592 aaKnown RBP eCLIP3.25□□□□□ -1.89
USP48-215ENST00000534705 MOAP1Q96BY2 351 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 ZNF653Q96CK0 615 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 PGAM5Q96HS1 289 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 ST6GAL2Q96JF0 529 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 AGAP3Q96P47 875 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 SH3GL3Q99963 347 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 PAIP2Q9BPZ3 127 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 FUT8Q9BYC5 575 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 NAPBQ9H115 298 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 C2orf40Q9H1Z8 148 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 SH2D4AQ9H788 454 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 ERVMER34-1Q9H9K5 563 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 XAB2Q9HCS7 855 aaKnown RBP3.25□□□□□ -1.89
USP48-215ENST00000534705 SMC3Q9UQE7 1217 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 LYVE1Q9Y5Y7 322 aa3.25□□□□□ -1.89
USP48-215ENST00000534705 LAMA3Q16787 3333 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 A0A1W2PPI3 338 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 C15orf62A8K5M9 175 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 F5H6K3 240 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 PI4K2BG5E9Z4 385 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 H0Y626 953 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 H0YHG0 523 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 TMEM178BH3BS89 294 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 PDLIM1O00151 329 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 MPHOSPH10O00566 681 aaKnown RBP3.24□□□□□ -1.89
USP48-215ENST00000534705 VILLO15195 856 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 SHOX2O60902 331 aaPredicted RBP3.24□□□□□ -1.89
USP48-215ENST00000534705 CTSVO60911 334 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 NDUFB10O96000 172 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 PRSS1P07477 247 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 ADRB2P07550 413 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 QDPRP09417 244 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 TPM1P09493 284 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 THEGLP0DJG4 465 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 SP100P23497 879 aaPredicted RBP3.24□□□□□ -1.89
USP48-215ENST00000534705 DCTP40126 519 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 PSMB10P40306 273 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 PRPHP41219 470 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 LMAN1P49257 510 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 SLC8A3P57103 927 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 HAND2P61296 217 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 IFI35P80217 286 aaPredicted RBP3.24□□□□□ -1.89
USP48-215ENST00000534705 SARNPP82979 210 aaKnown RBP3.24□□□□□ -1.89
USP48-215ENST00000534705 COG7P83436 770 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 KLRC3Q07444 240 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 BFSP1Q12934 665 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 STK4Q13043 487 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 GAGE2BQ13066 116 aa3.24□□□□□ -1.89
USP48-215ENST00000534705 GRB14Q14449 540 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms