RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 MAZP56270 477 aaKnown RBP2.44□□□□□ -2.02
CD44-238ENST00000534296 ROR1Q01973 937 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 ZNF273Q14593 569 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 E2F5Q15329 346 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 KLHL26Q53HC5 615 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 SLC35D3Q5M8T2 416 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 ARMC3Q5W041 872 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 LYSMD4Q5XG99 296 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 FAM91A1Q658Y4 838 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 ZNF613Q6PF04 617 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 ANKRD23Q86SG2 305 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 TMPRSS11BQ86T26 416 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 P2RY8Q86VZ1 359 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 HOGA1Q86XE5 327 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 IQCA1Q86XH1 822 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 CROCCP3Q8IVE0 287 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 CEP57L1Q8IYX8 460 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 KIRREL3Q8IZU9 778 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 EID3Q8N140 333 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 RASGEF1AQ8N9B8 481 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 NPEPL1Q8NDH3 523 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 OR10G8Q8NGN5 311 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 OR4C3Q8NH37 302 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 VANGL1Q8TAA9 524 aaPredicted RBP2.44□□□□□ -2.02
CD44-238ENST00000534296 C9orf43Q8TAL5 461 aaPredicted RBP2.44□□□□□ -2.02
CD44-238ENST00000534296 ZNRF4Q8WWF5 429 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 BSCL2Q96G97 398 aaPredicted RBP2.44□□□□□ -2.02
CD44-238ENST00000534296 VMP1Q96GC9 406 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 ERO1AQ96HE7 468 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 PRAC1Q96KF2 57 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 JAKMIP1Q96N16 626 aaKnown RBP2.44□□□□□ -2.02
CD44-238ENST00000534296 VGLL1Q99990 258 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 CPVLQ9H3G5 476 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 MYNNQ9NPC7 610 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 P4HTMQ9NXG6 502 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 VPS18Q9P253 973 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 C5AR2Q9P296 337 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 MAN1B1Q9UKM7 699 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 ITGA11Q9UKX5 1188 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 STUB1Q9UNE7 303 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 MOB4Q9Y3A3 225 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 TRIM17Q9Y577 477 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 LIPGQ9Y5X9 500 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 TRAV24A0A0B4J272 114 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 ENO4A6NNW6 628 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 CCDC188H7C350 402 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 RAD51DO75771 328 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 SORBS2O94875 1100 aaKnown RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 WDPCPO95876 746 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 GBAP04062 536 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 SPP1P10451 314 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 EPCAMP16422 314 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 IFNAR1P17181 557 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 CD22P20273 847 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 ATP5DP30049 168 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 HOXC13P31276 330 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 CRKLP46109 303 aaKnown RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 PAX9P55771 341 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 MTCP1P56278 107 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 KRTAP10-5P60370 271 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 POLR2LP62875 67 aaKnown RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 MYL7Q01449 175 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 SULT2A1Q06520 285 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 TRAP1Q12931 704 aaKnown RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 SGCGQ13326 291 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 NONOQ15233 471 aaKnown RBP eCLIP2.43□□□□□ -2.02
CD44-238ENST00000534296 NPTX1Q15818 432 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 TAZQ16635 292 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 ITPRIPL2Q3MIP1 535 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 FAM174BQ3ZCQ3 159 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 FASTKD1Q53R41 847 aaKnown RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 C6orf136Q5SQH8 315 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 OR4A47Q6IF82 309 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 FUT10Q6P4F1 479 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 HOOK3Q86VS8 718 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 LACC1Q8IV20 430 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 MMD2Q8IY49 270 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 SPEM1Q8N4L4 309 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 MAPKAPK5-AS1Q8N8E1 139 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 OR11H4Q8NGC9 324 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 OR6S1Q8NH40 331 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 OR52N5Q8NH56 324 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 PSMA8Q8TAA3 256 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 AFAP1L1Q8TED9 768 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 EXOC4Q96A65 974 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 PYCR2Q96C36 320 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 FAM71F1Q96KD3 344 aaPredicted RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 C18orf12Q96KH6 178 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 NSMCE3Q96MG7 304 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 MUS81Q96NY9 551 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 ATOH8Q96SQ7 321 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 CABLES2Q9BTV7 478 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 FAM129AQ9BZQ8 928 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 NYXQ9GZU5 481 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 UPF3AQ9H1J1 476 aaKnown RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 COPS7BQ9H9Q2 264 aaPredicted RBP2.43□□□□□ -2.02
CD44-238ENST00000534296 TMEM161AQ9NX61 479 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 PPP1R3CQ9UQK1 317 aa2.43□□□□□ -2.02
CD44-238ENST00000534296 PCDH11YQ9BZA8 1340 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms