RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 FOXR1Q6PIV2 292 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 DTX1Q86Y01 620 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 OR1L3Q8NH93 324 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 NEIL2Q969S2 332 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 ZIM3Q96PE6 472 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 OR2A5Q96R48 311 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 ZFYVE21Q9BQ24 234 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 CD244Q9BZW8 370 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 SYNPO2LQ9H987 977 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 GPRC5BQ9NZH0 403 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 TMEM216Q9P0N5 145 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 COPG2Q9UBF2 871 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 EMCNQ9ULC0 261 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 ASB1Q9Y576 335 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 PCDHB3Q9Y5E6 796 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 SEC16AO15027 2179 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 FER1L5A0AVI2 2057 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 CELSR3Q9NYQ7 3312 aa13.87□□□□□ -0.19
CPSF1-206ENST00000531480 ANKRD11Q6UB99 2663 aaPredicted RBP13.87□□□□□ -0.19
CPSF1-206ENST00000531480 TLDC2A0PJX2 215 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 FITM1A5D6W6 292 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 SMIM23A6NLE4 172 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 SUPT3HB4E1H0 165 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 TMEM150CB9EJG8 249 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 STX16-NPEPL1H3BU86 382 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 H7BY64 318 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 GOLGA8RI6L899 631 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 TK2O00142 265 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 AGRPO00253 132 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 STX16O14662 325 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 TLX3O43711 291 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-206ENST00000531480 SRPX2O60687 465 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-206ENST00000531480 GLRA3O75311 464 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 SUPT3HO75486 399 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 TIAF1O95411 115 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 KRT4P19013 534 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 EPORP19235 508 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 CASP2P42575 452 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 HSPA7P48741 367 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 TSTA3Q13630 321 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-206ENST00000531480 CEP85LQ5SZL2 805 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 PWWP2BQ6NUJ5 590 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 LRRC70Q7Z2Q7 622 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 MCATQ8IVS2 390 aaKnown RBP13.86□□□□□ -0.19
CPSF1-206ENST00000531480 SLC5A11Q8WWX8 675 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 FGF11Q92914 225 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 WDR34Q96EX3 536 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 LRFN5Q96NI6 719 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 PRAP1Q96NZ9 151 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 CTRCQ99895 268 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 C1QTNF3Q9BXJ4 246 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 CAPS2Q9BXY5 557 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 EHD1Q9H4M9 534 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 PELI2Q9HAT8 420 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 FANCEQ9HB96 536 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 WWOXQ9NZC7 414 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 SERTAD3Q9UJW9 196 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 KCNE2Q9Y6J6 123 aa13.86□□□□□ -0.19
CPSF1-206ENST00000531480 ZZEF1O43149 2961 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 SRRM3A6NNA2 597 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-206ENST00000531480 HMGB1P1B2RPK0 211 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-206ENST00000531480 HAT1O14929 419 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 RGS16O15492 202 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-206ENST00000531480 PRAMEF4O60810 478 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 WDR47O94967 919 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 S100BP04271 92 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-206ENST00000531480 CDH1P12830 882 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 GNAZP19086 355 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 CCT5P48643 541 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 AGTR2P50052 363 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 EMP3P54852 163 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 ITGA1P56199 1179 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 CDC16Q13042 620 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 PFKFB4Q16877 469 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 DEFB110Q30KQ9 67 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 KRT71Q3SY84 523 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 TUBB8Q3ZCM7 444 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 TCTE1Q5JU00 501 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 PRAMEF9Q5VWM5 478 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 FRMPD2BQ6IN97 320 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 TLDC1Q6P9B6 456 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 NXPE4Q6UWF7 544 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 ZNF517Q6ZMY9 492 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-206ENST00000531480 SLCO4C1Q6ZQN7 724 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 PROSER1Q86XN7 944 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 ARHGEF39Q8N4T4 335 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 ARFGAP2Q8N6H7 521 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 BANPQ8N9N5 519 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 ESAMQ96AP7 390 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 THAP11Q96EK4 314 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 PGM2Q96G03 612 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 TSNARE1Q96NA8 513 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 DNAJC11Q9NVH1 559 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 SENP1Q9P0U3 644 aa13.85□□□□□ -0.19
CPSF1-206ENST00000531480 TNPO3Q9Y5L0 923 aaKnown RBP13.85□□□□□ -0.19
CPSF1-206ENST00000531480 STMND1H3BQB6 276 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 K7EPI3 171 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 TAF4O00268 1085 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 E2F3O00716 465 aa13.84□□□□□ -0.19
CPSF1-206ENST00000531480 STK17BO94768 372 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms