RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IFT80Q9P2H3 777 aaPredicted RBP10.16□□□□□ -0.78
CD44-227ENST00000528086 MTO1Q9Y2Z2 717 aaKnown RBP10.16□□□□□ -0.78
CD44-227ENST00000528086 MRFAP1Q9Y605 127 aa10.16□□□□□ -0.78
CD44-227ENST00000528086 SETXQ7Z333 2677 aaKnown RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 IGLV3-12A0A075B6K2 115 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 TCRBV9S1A1TA0A576 114 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 ESYT3A0FGR9 886 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 FAM159BA6NKW6 160 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 C9J4A7 227 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 SLC16A5O15375 505 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 MAP3K7O43318 606 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 ZBTB14O43829 449 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 DNAJB6O75190 326 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 FAM155BO75949 473 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 C8GP07360 202 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 AGXTP21549 392 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 CASRP41180 1078 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 BCL6P41182 706 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 SLC7A5Q01650 507 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 RELAQ04206 551 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 TLE1Q04724 770 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 Q0VFX4 171 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 NAE1Q13564 534 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 TSTA3Q13630 321 aaPredicted RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 IGFBP7Q16270 282 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 C18orf21Q32NC0 220 aaPredicted RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 NADK2Q4G0N4 442 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 TCTE1Q5JU00 501 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 YOD1Q5VVQ6 348 aaPredicted RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 KIRREL2Q6UWL6 708 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 ASB18Q6ZVZ8 466 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 STRA8Q7Z7C7 330 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 RBMXL3Q8N7X1 1067 aaKnown RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 Q8NA96 180 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 ZNF740Q8NDX6 193 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 OR56A3Q8NH54 315 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 SEC14L1Q92503 715 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 N4BP2L2Q92802 583 aaPredicted RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 FKBP10Q96AY3 582 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 PYCR2Q96C36 320 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 TM4SF19Q96DZ7 209 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 VPS39Q96JC1 886 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 UNKQ9C0B0 810 aaKnown RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 CAB39LQ9H9S4 337 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 SAYSD1Q9NPB0 183 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 PPANQ9NQ55 473 aaKnown RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 TXLNGQ9NUQ3 528 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 ABCF3Q9NUQ8 709 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 P4HTMQ9NXG6 502 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 ANKMY1Q9P2S6 941 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 PCDHGA9Q9Y5G4 932 aaKnown RBP10.15□□□□□ -0.78
CD44-227ENST00000528086 HS3ST3B1Q9Y662 390 aa10.15□□□□□ -0.78
CD44-227ENST00000528086 FLNBO75369 2602 aaKnown RBP10.15□□□□□ -0.79
CD44-227ENST00000528086 FAM95CA0A1B0GW59 222 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 FEZF1A0PJY2 475 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 HMX2A2RU54 273 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 A6NL46 340 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 PRAMEF4O60810 478 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 ALBP02768 609 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 EIF2S1P05198 315 aaKnown RBP10.14□□□□□ -0.79
CD44-227ENST00000528086 HSD17B2P37059 387 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 SLC26A3P40879 764 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 KCNC1P48547 511 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 CSRP3P50461 194 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 ARSFP54793 590 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 EMP3P54852 163 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 PLTPP55058 493 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 IL2P60568 153 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 ABATP80404 500 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 SRSF1Q07955 248 aaKnown RBP eCLIP10.14□□□□□ -0.79
CD44-227ENST00000528086 SP140Q13342 867 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 RAPSNQ13702 412 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 EFTUD2Q15029 972 aaKnown RBP eCLIP10.14□□□□□ -0.79
CD44-227ENST00000528086 SYT16Q17RD7 645 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 VWA2Q5GFL6 755 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 DCAF10Q5QP82 559 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 PRAMEF9Q5VWM5 478 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 PRAMEF13Q5VWM6 474 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 FAM45BPQ6NSW5 357 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 ATG14Q6ZNE5 492 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 CYS1Q717R9 158 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 SLC26A11Q86WA9 606 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 PDSS2Q86YH6 399 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 SPATA6LQ8N4H0 392 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 CSNK1A1LQ8N752 337 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 NOA1Q8NC60 698 aaKnown RBP10.14□□□□□ -0.79
CD44-227ENST00000528086 ABHD11Q8NFV4 315 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 OR4K1Q8NGD4 311 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 FAM45AQ8TCE6 357 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 STT3BQ8TCJ2 826 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 PTERQ96BW5 349 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 FBXL8Q96CD0 374 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 MOCOSQ96EN8 888 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 C16orf45Q96MC5 204 aaPredicted RBP10.14□□□□□ -0.79
CD44-227ENST00000528086 LRRC1Q9BTT6 524 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 SLC7A5P2Q9GIP4 190 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 RHOJQ9H4E5 214 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 SOX17Q9H6I2 414 aaPredicted RBP10.14□□□□□ -0.79
CD44-227ENST00000528086 WDR54Q9H977 334 aa10.14□□□□□ -0.79
CD44-227ENST00000528086 LRRC4CQ9HCJ2 640 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms