RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 CDK2AP1O14519 115 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 PDE9AO76083 593 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 F12P00748 615 aaPredicted RBP13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 ERVK-10P10266 1014 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 KDELR1P24390 212 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 ACRV1P26436 265 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 ACVR2AP27037 513 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 ADH7P40394 386 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 WASHC5Q12768 1159 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 EXT1Q16394 746 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 GPR33Q49SQ1 333 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 GXYLT1Q4G148 440 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 E4F1Q66K89 784 aaPredicted RBP13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 SERPINA9Q86WD7 417 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 ELMO1Q92556 727 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 RAPGEF5Q92565 580 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 ZFYVE21Q9BQ24 234 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 BDH2Q9BUT1 245 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 TRIM45Q9H8W5 580 aaPredicted RBP13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 PNPLA3Q9NST1 481 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 C19orf25Q9UFG5 118 aaPredicted RBP13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 FAM215AQ9Y5M1 114 aa13.04□□□□□ -0.32
NKX3-1-202ENST00000523261 C5orf60A6NFR6 353 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 SYT5O00445 386 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 CCL22O00626 93 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 FOXS1O43638 330 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 AP2A2O94973 939 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 AGTP01019 485 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 CYC1P08574 325 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 ANXA5P08758 320 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 PRSS56P0CW18 603 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 PSMB5P28074 263 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 UQCRC1P31930 480 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 MAT1AQ00266 395 aaKnown RBP13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 UBXN1Q04323 297 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 MPP3Q13368 585 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 FBXW10Q5XX13 1052 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 WDR53Q7Z5U6 358 aaPredicted RBP13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 SULF2Q8IWU5 870 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 VWA5B2Q8N398 1253 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 ARHGEF39Q8N4T4 335 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 OR52N2Q8NGI0 321 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 TMEM158Q8WZ71 300 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 Q96MF0 132 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 FCRL5Q96RD9 977 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 CDCP1Q9H5V8 836 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 RUVBL1Q9Y265 456 aaKnown RBP13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 KLF13Q9Y2Y9 288 aaPredicted RBP13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 PRSS21Q9Y6M0 314 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 ANK2Q01484 3957 aa13.03□□□□□ -0.32
NKX3-1-202ENST00000523261 ANK3Q12955 4377 aaKnown RBP13.02□□□□□ -0.32
NKX3-1-202ENST00000523261 LRRC53A6NM62 1247 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 NPIPA2E9PIF3 369 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 NPIPA3F8WFD2 350 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 H0YGG7 62 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 TPP2P29144 1249 aaPredicted RBP13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 MC4RP32245 332 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 CYB561P49447 251 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 ZNF140P52738 457 aaPredicted RBP13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 ARF3P61204 181 aaPredicted RBP13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 DNAJC21Q5F1R6 531 aaKnown RBP13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 RTL6Q6ICC9 239 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 HMBOX1Q6NT76 420 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 FBXO42Q6P3S6 717 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 B3GNT6Q6ZMB0 384 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 ANKRD37Q7Z713 158 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 RPS19BP1Q86WX3 136 aaKnown RBP13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 P3H2Q8IVL5 708 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 ZFP62Q8NB50 900 aaPredicted RBP13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 OR5M9Q8NGP3 310 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 ENOX1Q8TC92 643 aaKnown RBP13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 TMEM125Q96AQ2 219 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 MIPEPQ99797 713 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 FSD1LQ9BXM9 530 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 SYNPO2LQ9H987 977 aa13.02□□□□□ -0.33
NKX3-1-202ENST00000523261 A0A0A6YYC8 382 aaPredicted RBP13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 OR2A25A4D2G3 310 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 TRIM64A6NGJ6 449 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 TRIM64BA6NI03 449 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 FIGNL2A6NMB9 653 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 ZNF487B1APH4 448 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 I3L1I5 382 aaPredicted RBP13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 NDC80O14777 642 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 APOL1O14791 398 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 CYP1A2P05177 515 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 ITGA8P53708 1063 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 TAS2R50P59544 299 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 PLOD1Q02809 727 aaPredicted RBP13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 CBLBQ13191 982 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 MSLNQ13421 630 aaPredicted RBP13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 DBN1Q16643 649 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 HKDC1Q2TB90 917 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 SYTL3Q4VX76 610 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 CT47A1Q5JQC4 288 aaPredicted RBP13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 GARNL3Q5VVW2 1013 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 LRRC8BQ6P9F7 803 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 PAPD4Q6PIY7 484 aaKnown RBP13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 CAPN12Q6ZSI9 719 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 DCUN1D3Q8IWE4 304 aa13.01□□□□□ -0.33
NKX3-1-202ENST00000523261 SHISA5Q8N114 240 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms