RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	PPHLN1	Q8NEY8	458 aa	Known RBP	14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	ADAMTS18	Q8TE60	1221 aa		14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	THAP3	Q8WTV1	239 aa	Predicted RBP	14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	METTL21A	Q8WXB1	218 aa		14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	PLCD4	Q9BRC7	762 aa		14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	DRC3	Q9H069	523 aa		14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	ETNK1	Q9HBU6	452 aa		14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	MARCH4	Q9P2E8	410 aa	Predicted RBP	14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	R3HDM2	Q9Y2K5	976 aa	Known RBP	14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	PCDHGB6	Q9Y5F9	930 aa		14.93	□□□□□ -0.02
LMNA-223	ENST00000515459	CACNA1C	Q13936	2221 aa		14.93	□□□□□ -0.02
LMNA-223	ENST00000515459		A0A0A6YYC8	382 aa	Predicted RBP	14.92	□□□□□ -0.02
LMNA-223	ENST00000515459		A8MUI8	341 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459		I3L1I5	382 aa	Predicted RBP	14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	TXNDC9	O14530	226 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	TTI1	O43156	1089 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	FOXS1	O43638	330 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	PKM	P14618	531 aa	Known RBP	14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	RPS3	P23396	243 aa	Known RBP eCLIP	14.92	□□□□□ -0.02	4e-9	■■■□□ 15
LMNA-223	ENST00000515459	STIP1	P31948	543 aa	Known RBP	14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	RPA3	P35244	121 aa	Predicted RBP	14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	FDFT1	P37268	417 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	SYT16	Q17RD7	645 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	SUSD1	Q6UWL2	747 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	SPNS3	Q6ZMD2	512 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	LRRC6	Q86X45	466 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	SPPL2C	Q8IUH8	684 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	CEP97	Q8IW35	865 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	UBL4B	Q8N7F7	174 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	LRRC57	Q8N9N7	239 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	SMPDL3A	Q92484	453 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	RERG	Q96A58	199 aa	Predicted RBP	14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	C14orf79	Q96F83	325 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	ZNF354B	Q96LW1	612 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	GPR137	Q96N19	417 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	SYNPO2L	Q9H987	977 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	GPAM	Q9HCL2	828 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	UTP6	Q9NYH9	597 aa	Known RBP	14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	ZNF835	Q9Y2P0	537 aa		14.92	□□□□□ -0.02
LMNA-223	ENST00000515459	AKAP9	Q99996	3911 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	IGKV1-8	A0A0C4DH67	115 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	BTNL10	A8MVZ5	291 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	FAM227A	F5H4B4	570 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	NDUFS3	O75489	264 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	MATN4	O95460	622 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	ERG	P11308	486 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	EZR	P15311	586 aa	Known RBP	14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	KIR3DL1	P43629	444 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	EFNA3	P52797	238 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	KRTAP10-9	P60411	292 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	TSTA3	Q13630	321 aa	Predicted RBP	14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	FAM53B	Q14153	422 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	CDSN	Q15517	529 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	TESK1	Q15569	626 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	BTBD16	Q32M84	506 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	ANKRD20A4	Q4UJ75	823 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459		Q6ZPB1	254 aa	Predicted RBP	14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	PAQR7	Q86WK9	346 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	BEST3	Q8N1M1	668 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	MPP5	Q8N3R9	675 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	OR9A1P	Q8NGU1	263 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	OR2A5	Q96R48	311 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	CHRAC1	Q9NRG0	131 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	TSR3	Q9UJK0	312 aa	Known RBP	14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	AMFR	Q9UKV5	643 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	MEMO1	Q9Y316	297 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	EPN1	Q9Y6I3	576 aa	Predicted RBP	14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	SETD2	Q9BYW2	2564 aa	Predicted RBP	14.91	□□□□□ -0.02
LMNA-223	ENST00000515459	TACC2	O95359	2948 aa		14.91	□□□□□ -0.02
LMNA-223	ENST00000515459		A0A0U1RQJ8	604 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	TCRBV7S2A1N4T	A0A589	114 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	GRID2IP	A4D2P6	1211 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	SEC24D	O94855	1032 aa	Predicted RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	IPO7	O95373	1038 aa	Known RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	CYC1	P08574	325 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	EEF1D	P29692	281 aa	Known RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	AVPR1B	P47901	424 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	EIF3B	P55884	814 aa	Known RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	MAT1A	Q00266	395 aa	Known RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	ALDH6A1	Q02252	535 aa	Known RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	PRDX1	Q06830	199 aa	Known RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	NDUFA9	Q16795	377 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	PCID2	Q5JVF3	399 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	ACER2	Q5QJU3	275 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	MFSD4B	Q5TF39	518 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	ICE2	Q659A1	982 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	PLAG1	Q6DJT9	500 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	ZNF425	Q6IV72	752 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	H3F3C	Q6NXT2	135 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	PEX26	Q7Z412	305 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	CPEB2	Q7Z5Q1	589 aa	Known RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	CDH24	Q86UP0	819 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	ARHGEF39	Q8N4T4	335 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	CHTF18	Q8WVB6	975 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	SPOCK3	Q9BQ16	436 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	VN1R1	Q9GZP7	353 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	C19orf25	Q9UFG5	118 aa	Predicted RBP	14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	TAC3	Q9UHF0	121 aa		14.9	□□□□□ -0.02
LMNA-223	ENST00000515459	IGHV3-20	A0A0C4DH32	117 aa		14.89	□□□□□ -0.03
LMNA-223	ENST00000515459	MIF4GD	A9UHW6	222 aa	Known RBP	14.89	□□□□□ -0.03

Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms