RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 IL22RA1Q8N6P7 574 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 OR4K1Q8NGD4 311 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 SLC5A11Q8WWX8 675 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 NKD1Q969G9 470 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 RERGQ96A58 199 aaPredicted RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 NAF1Q96HR8 494 aaKnown RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 DCBLD2Q96PD2 775 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 OR4K3Q96R72 315 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 DPH2Q9BQC3 489 aaPredicted RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 MRPL57Q9BQC6 102 aaKnown RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 EFHD1Q9BUP0 239 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 SPRTNQ9H040 489 aaPredicted RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 ACTR5Q9H9F9 607 aaPredicted RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 GPRC5BQ9NZH0 403 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 TBK1Q9UHD2 729 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 SRPK3Q9UPE1 567 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 SLC22A14Q9Y267 594 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 KCNE1BA0A087WTH5 132 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 FITM1A5D6W6 292 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 SRRM3A6NNA2 597 aaPredicted RBP13.66□□□□□ -0.22
NUP54-216ENST00000514901 UBXN8O00124 270 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 TAPBPO15533 448 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 ZNF749O43361 778 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 HCRTR1O43613 425 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 ERLIN1O75477 346 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 WDR47O94967 919 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 TIAF1O95411 115 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 NTRK1P04629 796 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 GSTA1P08263 222 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 CDH1P12830 882 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 KRT15P19012 456 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 GNAZP19086 355 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 CXCR2P25025 360 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 SLCO1A2P46721 670 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 GLRBP48167 497 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 EMP3P54852 163 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 CSNK1G2P78368 415 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 TECRLQ5HYJ1 363 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 MANEAQ5SRI9 462 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 METTL2BQ6P1Q9 378 aaKnown RBP13.66□□□□□ -0.22
NUP54-216ENST00000514901 TIPARPQ7Z3E1 657 aaKnown RBP13.66□□□□□ -0.22
NUP54-216ENST00000514901 ZNF655Q8N720 491 aaPredicted RBP13.66□□□□□ -0.22
NUP54-216ENST00000514901 TTC29Q8NA56 475 aaPredicted RBP13.66□□□□□ -0.22
NUP54-216ENST00000514901 GALNT6Q8NCL4 622 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 PROKR1Q8TCW9 393 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 EXT2Q93063 718 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 CLIP3Q96DZ5 547 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 SCYL1Q96KG9 808 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 NDC1Q9BTX1 674 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 SARGQ9BW04 601 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 CD244Q9BZW8 370 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 FAM117AQ9C073 453 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 PELI2Q9HAT8 420 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 DNAJC11Q9NVH1 559 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 CUEDC1Q9NWM3 386 aaPredicted RBP13.66□□□□□ -0.22
NUP54-216ENST00000514901 DCDC2Q9UHG0 476 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 SSUH2Q9Y2M2 353 aa13.66□□□□□ -0.22
NUP54-216ENST00000514901 TNPO3Q9Y5L0 923 aaKnown RBP13.66□□□□□ -0.22
NUP54-216ENST00000514901 MDC1Q14676 2089 aaKnown RBP13.66□□□□□ -0.22
NUP54-216ENST00000514901 TLDC2A0PJX2 215 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 H0YGG7 62 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 MEN1O00255 615 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 KLK8O60259 260 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 H2AFYO75367 372 aaKnown RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 MTHFD2P13995 350 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 GFAPP14136 432 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 GDF5P43026 501 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 HSPA7P48741 367 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 ALDH18A1P54886 795 aaKnown RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 VSX2P58304 361 aaPredicted RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 ARF3P61204 181 aaPredicted RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 CDC16Q13042 620 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 NAA30Q147X3 362 aaPredicted RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 TGIF1Q15583 401 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 WASHC2DQ5SRD0 308 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 RHBDD2Q6NTF9 364 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 NXPE4Q6UWF7 544 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 LRRC70Q7Z2Q7 622 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 EPS8L3Q8TE67 593 aaKnown RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 MZB1Q8WU39 189 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 UBTD2Q8WUN7 234 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 NEIL2Q969S2 332 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 KIAA1143Q96AT1 154 aaPredicted RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 OR2A5Q96R48 311 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 CCNL2Q96S94 520 aaPredicted RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 AIF1LQ9BQI0 150 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 TMEM79Q9BSE2 394 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 TMEM109Q9BVC6 243 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 NLNQ9BYT8 704 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 PITHD1Q9GZP4 211 aaPredicted RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 MRPL46Q9H2W6 279 aaKnown RBP13.65□□□□□ -0.22
NUP54-216ENST00000514901 LHX9Q9NQ69 397 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 PCMTD2Q9NV79 361 aa13.65□□□□□ -0.22
NUP54-216ENST00000514901 PTPRQQ9UMZ3 2332 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 USP24Q9UPU5 2620 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 CELSR3Q9NYQ7 3312 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 LOC105369274A0A096LPK9 316 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 LOC102723532A0A0G2JNH3 316 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 CCDC151A5D8V7 595 aa13.64□□□□□ -0.23
NUP54-216ENST00000514901 SMIM23A6NLE4 172 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms