RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PITPNM1O00562 1244 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 PTX3P26022 381 aaPredicted RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 HTR6P50406 440 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 SUZ12Q15022 739 aaKnown RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 PIGGQ5H8A4 983 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 CEACAM20Q6UY09 585 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 KBTBD6Q86V97 674 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 MOSPD2Q8NHP6 518 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 SNX33Q8WV41 574 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 IPCEF1Q8WWN9 437 aaPredicted RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 ISOC1Q96CN7 298 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ZNF514Q96K75 400 aaPredicted RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 ZFP3Q96NJ6 502 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 SORT1Q99523 831 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 SP140LQ9H930 580 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 MEAF6Q9HAF1 191 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ELL3Q9HB65 397 aaPredicted RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 AIG1Q9NVV5 245 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 MTMR10Q9NXD2 777 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 SPATA7Q9P0W8 599 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 SLC45A1Q9Y2W3 748 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ASB3Q9Y575 518 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 GPC6Q9Y625 555 aaPredicted RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 ABCB7O75027 752 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 FGF19O95750 216 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 CSTF2P33240 577 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP53-209ENST00000514665 XKP51811 444 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 VBP1P61758 197 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 LY6G5CQ5SRR4 150 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 BRAT1Q6PJG6 821 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 GHDCQ8N2G8 530 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ACVR1CQ8NER5 493 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 TFGQ92734 400 aaPredicted RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 RAB8BQ92930 207 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 SMOXQ9NWM0 555 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ERVW-1Q9UQF0 538 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 F5P12259 2224 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 RIIAD1A6NNX1 92 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 MMP20O60882 483 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 CH25HO95992 272 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 BCKDHAP12694 445 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 CRISP3P54108 245 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 RAB25P57735 213 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ABATP80404 500 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ILF3Q12906 894 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP53-209ENST00000514665 KRT77Q7Z794 578 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 GALNT10Q86SR1 603 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 NPAS3Q8IXF0 933 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 TMEM145Q8NBT3 493 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ZFAND2BQ8WV99 257 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 S100A13Q99584 98 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 DLGAP4Q9Y2H0 992 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 BTN3A3O00478 584 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ERI3O43414 337 aaKnown RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 CHST10O43529 356 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 CHRNA1P02708 482 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 CPN2P22792 545 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 TIE1P35590 1138 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ATP4BP51164 291 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 FAM189BP81408 668 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ABRAXAS2Q15018 415 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 KHDRBS2Q5VWX1 349 aaKnown RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 BLOC1S3Q6QNY0 202 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 TMIGD1Q6UXZ0 262 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 PRR23BQ6ZRT6 265 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 IKBIPQ70UQ0 350 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 NUDT13Q86X67 352 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 EGFL6Q8IUX8 553 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 PRSS58Q8IYP2 241 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 CNIH3Q8TBE1 160 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 RFKQ969G6 155 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 NUS1Q96E22 293 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 RBM18Q96H35 190 aaKnown RBP12.32□□□□□ -0.44
USP53-209ENST00000514665 DHRS4Q9BTZ2 278 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ZSCAN5AQ9BUG6 496 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 INSL5Q9Y5Q6 135 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 ST14Q9Y5Y6 855 aa12.32□□□□□ -0.44
USP53-209ENST00000514665 NME4O00746 187 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 ACOX3O15254 700 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 TYRP14679 529 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 ZNF8P17098 575 aaPredicted RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 CAPN3P20807 821 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 HNF1BP35680 557 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 ADAM17P78536 824 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 COL9A2Q14055 689 aaPredicted RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 LRRC32Q14392 662 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 UAP1L1Q3KQV9 507 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 OGFRL1Q5TC84 451 aaPredicted RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 NOXRED1Q6NXP6 359 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 PEX5LQ8IYB4 626 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 OXR1Q8N573 874 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 C20orf27Q9GZN8 174 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 TDP1Q9NUW8 608 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 SLCO3A1Q9UIG8 710 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 FBXL21Q9UKT6 434 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 CDC14AQ9UNH5 594 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 RPL36Q9Y3U8 105 aaKnown RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 COLEC10Q9Y6Z7 277 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 H3BNH8 94 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 SOCS2O14508 198 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms