RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ASNA1O43681 348 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 MAN1A2O60476 641 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 MLYCDO95822 493 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 CD99P14209 185 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 EMP3P54852 163 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 COPS2P61201 443 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 SNRPNP63162 240 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 AFTPHQ6ULP2 937 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 CRLF3Q8IUI8 442 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 SIAH3Q8IW03 269 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 RAB42Q8N4Z0 105 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 DNAAF3Q8N9W5 541 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 OR6P1Q8NGX9 317 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 OR4L1Q8NH43 312 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 GSDMBQ8TAX9 411 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 HMGCLL1Q8TB92 370 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 METTL21AQ8WXB1 218 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 NRGNQ92686 78 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 MVB12AQ96EY5 273 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 ZNF778Q96MU6 729 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 FRMD6Q96NE9 622 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 NPAS2Q99743 824 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 TREX2Q9BQ50 279 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 TRIM51Q9BSJ1 452 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 KCNK13Q9HB14 408 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 PPT2Q9UMR5 302 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 SPG11Q96JI7 2443 aa19.22■□□□□ 0.67
SQSTM1-215ENST00000514093 SYCE3A1L190 88 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 ASPDHA6ND91 283 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 OR2W5A6NFC9 320 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 CMPK1P30085 196 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 TMED2Q15363 201 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 FASTKD1Q53R41 847 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 MFSD4BQ5TF39 518 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 SUSD1Q6UWL2 747 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 GALNTL5Q7Z4T8 443 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 CPEB2Q7Z5Q1 589 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 CHERPQ8IWX8 916 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 SCMH1Q96GD3 660 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 DMRTA2Q96SC8 542 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 CYTH2Q99418 400 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 UTP23Q9BRU9 249 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 TMUB1Q9BVT8 246 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 VN1R1Q9GZP7 353 aa19.21■□□□□ 0.67
SQSTM1-215ENST00000514093 DNHD1Q96M86 4753 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 E9PLN8 166 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 VPS26AO75436 327 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 CD46P15529 392 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 MAGEA1P43355 309 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 GTF3C1Q12789 2109 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 MINDY4Q4G0A6 757 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 PTRHD1Q6GMV3 140 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 H3F3CQ6NXT2 135 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 FGD2Q7Z6J4 655 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 PAQR7Q86WK9 346 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 GHDCQ8N2G8 530 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 ARHGEF39Q8N4T4 335 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 PHF10Q8WUB8 498 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 VKORC1Q9BQB6 163 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 PLCD4Q9BRC7 762 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 DRC3Q9H069 523 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 MRPS30Q9NP92 439 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 COQ3Q9NZJ6 369 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 EFR3BQ9Y2G0 817 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 ASB1Q9Y576 335 aa19.2■□□□□ 0.66
SQSTM1-215ENST00000514093 ZNF469Q96JG9 3925 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 SCN2AQ99250 2005 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 IGKV1-8A0A0C4DH67 115 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 P2RX6O15547 441 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 TSPAN12O95859 305 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 STATHP02808 62 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 GDF10P55107 478 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 OC90Q02509 493 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 TSTA3Q13630 321 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 TRIM14Q14142 442 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 RNFT1Q5M7Z0 435 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 TSTD2Q5T7W7 516 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 PLAG1Q6DJT9 500 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 C11orf63Q6NUN7 778 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 OR2A5Q96R48 311 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 TNFRSF10DQ9UBN6 386 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 PCDHA3Q9Y5H8 950 aa19.19■□□□□ 0.66
SQSTM1-215ENST00000514093 PRRG2O14669 202 aa19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 MFAP3LO75121 409 aa19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 TPM3P06753 285 aa19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 CTNNA1P35221 906 aaKnown RBP19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 MEP1AQ16819 746 aa19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 GARNL3Q5VVW2 1013 aa19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 CEP128Q6ZU80 1094 aa19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 TMEM178AQ8NBL3 297 aa19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 OR9A4Q8NGU2 314 aa19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 RERGQ96A58 199 aaPredicted RBP19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 NPDC1Q9NQX5 325 aaPredicted RBP19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 MARCH4Q9P2E8 410 aaPredicted RBP19.18■□□□□ 0.66
SQSTM1-215ENST00000514093 NKX2-6A6NCS4 301 aa19.17■□□□□ 0.66
SQSTM1-215ENST00000514093 GABRR3A8MPY1 467 aa19.17■□□□□ 0.66
SQSTM1-215ENST00000514093 PRMT5O14744 637 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-215ENST00000514093 PSMD3O43242 534 aa19.17■□□□□ 0.66
SQSTM1-215ENST00000514093 TJP3O95049 919 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms