RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 C10orf107Q8IVU9 208 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 BMPERQ8N8U9 685 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 ANKRD42Q8N9B4 389 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 L3HYPDHQ96EM0 354 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 MECRQ9BV79 373 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 SCNM1Q9BWG6 230 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 CAPS2Q9BXY5 557 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 TMEM184CQ9NVA4 438 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 OXSMQ9NWU1 459 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 PISDQ9UG56 409 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 CLGNO14967 610 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 JMJD7P0C870 316 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 FGF3P11487 239 aaPredicted RBP28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 EZRP15311 586 aaKnown RBP28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 MEF2AQ02078 507 aaPredicted RBP28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 NXPE4Q6UWF7 544 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 SLCO4C1Q6ZQN7 724 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 RNF44Q7L0R7 432 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 ZNF483Q8TF39 744 aaPredicted RBP28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 FCRL4Q96PJ5 515 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 OR6C1Q96RD1 312 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 SELENOSQ9BQE4 189 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 PELI2Q9HAT8 420 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 FREM2Q5SZK8 3169 aa28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 SPTBP11277 2137 aa28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 HCRTR1O43613 425 aa28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 IMPDH1P20839 514 aa28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 VARSP26640 1264 aaKnown RBP28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 HPDP32754 393 aaPredicted RBP28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 FOXM1Q08050 763 aa28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 LIPMQ5VYY2 423 aa28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 PLD3Q8IV08 490 aa28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 FGF21Q9NSA1 209 aa28.4■■■□□ 2.14
LIMCH1-211ENST00000509638 KATNA1O75449 491 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 SUPT7LO94864 414 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 ADRB1P08588 477 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 ALDH3A1P30838 453 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 ETV5P41161 510 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 ACY1Q03154 408 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 CYP4F3Q08477 520 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 XKR6Q5GH73 641 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 ATG9BQ674R7 924 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 DNAJC22Q8N4W6 341 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 CCNYL1Q8N7R7 359 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 OR4K1Q8NGD4 311 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 PPP4R1Q8TF05 950 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 MOCOSQ96EN8 888 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 ZFYVE21Q9BQ24 234 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 SPNS1Q9H2V7 528 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 IPPKQ9H8X2 491 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 FANCEQ9HB96 536 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 MLXIPLQ9NP71 852 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 SEMA4BQ9NPR2 832 aaPredicted RBP28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 PILRAQ9UKJ1 303 aa28.39■■■□□ 2.14
LIMCH1-211ENST00000509638 B4E171 279 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 PRAMEF4O60810 478 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 MSL3P1P0C860 447 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 TSPAN7P41732 249 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 GABRA4P48169 554 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 DNAJB13P59910 316 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 GABREP78334 506 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 UNC50Q53HI1 259 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 PRAMEF9Q5VWM5 478 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 N4BP2L2Q92802 583 aaPredicted RBP28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 EHD1Q9H4M9 534 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 NOL11Q9H8H0 719 aaKnown RBP28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 ZBTB26Q9HCK0 441 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 APMAPQ9HDC9 416 aa28.38■■■□□ 2.13
LIMCH1-211ENST00000509638 A0A0J9YVX5 310 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 FEZF1A0PJY2 475 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 TMEM150CB9EJG8 249 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 ATP8B1O43520 1251 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 C1GALT1C1LP0DN25 315 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 GRK3P35626 688 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 SERPINB4P48594 390 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 MAPK10P53779 464 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 NAGLUP54802 743 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 CDH13P55290 713 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 REEP5Q00765 189 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 MC2RQ01718 297 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 IRF8Q02556 426 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 CHIT1Q13231 466 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 CAMK2BQ13554 666 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 SLBPQ14493 270 aaKnown RBP eCLIP28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 ZC3H12BQ5HYM0 836 aaKnown RBP28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 ZNF740Q8NDX6 193 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 PMEPA1Q969W9 287 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 POLR1BQ9H9Y6 1135 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 TSPAN8P19075 237 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 ARL1P40616 181 aaPredicted RBP28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 DOC2AQ14183 400 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 RBBP7Q16576 425 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 FRMPD2BQ6IN97 320 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 OR52B6Q8NGF0 335 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 MGARPQ8TDB4 240 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 ZNF501Q96CX3 271 aaPredicted RBP28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 PTCD3Q96EY7 689 aaKnown RBP28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 CTRCQ99895 268 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 AIF1LQ9BQI0 150 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 GSTO2Q9H4Y5 243 aa28.37■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms