RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MT-ND1P03886 318 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 HOXC4P09017 264 aaPredicted RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 GP1BBP13224 206 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 ACSL1P33121 698 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 ANP32AP39687 249 aaKnown RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 RGRP47804 291 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 ALDH3A2P51648 485 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 SRPXP78539 464 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 ACY1Q03154 408 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 CALD1Q05682 793 aaKnown RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 CXCL9Q07325 125 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 TMED8Q6PL24 325 aaPredicted RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 IKBIPQ70UQ0 350 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 ARHGAP22Q7Z5H3 698 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 PXKQ7Z7A4 578 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 IQCHQ86VS3 1027 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 RPAP2Q8IXW5 612 aaPredicted RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 GPATCH11Q8N954 259 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 AVL9Q8NBF6 648 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 C1orf131Q8NDD1 294 aaKnown RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 TRIM44Q96DX7 344 aaPredicted RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 ZMYND12Q9H0C1 365 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 CHMP4BQ9H444 224 aaKnown RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 TLE6Q9H808 572 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 MYOZ2Q9NPC6 264 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 IRAK4Q9NWZ3 460 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 PGAP2Q9UHJ9 254 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 ELF5Q9UKW6 265 aaPredicted RBP1.97□□□□□ -2.09
NUP54-208ENST00000508604 AUP1Q9Y679 476 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 PIAS3Q9Y6X2 628 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 TRBV4-1A0A0J9YWV2 114 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 K7ENM7 598 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 OR2C1O95371 312 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 RENP00797 406 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 DCDC1P59894 354 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 HSP90AB4PQ58FF6 505 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 C9orf66Q5T8R8 295 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 HIPK1Q86Z02 1210 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 MMD2Q8IY49 270 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 THAP8Q8NA92 274 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 METTL21AQ8WXB1 218 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 PIGBQ92521 554 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 SFXN2Q96NB2 322 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 TMED3Q9Y3Q3 217 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 RALGAPA1Q6GYQ0 2036 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 A0A1B0GTH9 108 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 A0A1W2PQ72 361 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 MTRF1O75570 445 aaKnown RBP1.96□□□□□ -2.1
NUP54-208ENST00000508604 ACSL3O95573 720 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 BCL10O95999 233 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 ATP1B1P05026 303 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 ADORA3P0DMS8 318 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 HAPLN1P10915 354 aaPredicted RBP1.96□□□□□ -2.1
NUP54-208ENST00000508604 MATR3P43243 847 aaKnown RBP eCLIP1.96□□□□□ -2.1
NUP54-208ENST00000508604 MFAP4P55083 255 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 MAT1AQ00266 395 aaKnown RBP1.96□□□□□ -2.1
NUP54-208ENST00000508604 UPP1Q16831 310 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 SYN2Q92777 582 aaPredicted RBP1.96□□□□□ -2.1
NUP54-208ENST00000508604 SAT2Q96F10 170 aaPredicted RBP1.96□□□□□ -2.1
NUP54-208ENST00000508604 MS4A10Q96PG2 267 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 SEC62Q99442 399 aaKnown RBP1.96□□□□□ -2.1
NUP54-208ENST00000508604 CUTCQ9NTM9 273 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 GTF2A1LQ9UNN4 478 aa1.96□□□□□ -2.1
NUP54-208ENST00000508604 GON4LQ3T8J9 2241 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 TRBV5-5A0A0J9YX44 114 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 ARHGEF33A8MVX0 844 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 PRDM1O75626 825 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 ATP1A3P13637 1013 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 CHMP24386 653 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 CCR3P51677 355 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 PRELPP51888 382 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 UCNP55089 124 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 RIPK4P57078 832 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 TRAP1Q12931 704 aaKnown RBP1.95□□□□□ -2.1
NUP54-208ENST00000508604 MAMLD1Q13495 774 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 ALDH1L2Q3SY69 923 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 FGD3Q5JSP0 725 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 LINC00242Q5T6M2 205 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 WSCD1Q658N2 575 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 LEMD1Q68G75 181 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 FAM43BQ6ZT52 329 aaPredicted RBP1.95□□□□□ -2.1
NUP54-208ENST00000508604 HSCBQ8IWL3 235 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 OR4K1Q8NGD4 311 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 OR4Q3Q8NH05 313 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 KIAA1524Q8TCG1 905 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 SLAMF9Q96A28 289 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 C7orf26Q96N11 449 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 CCDC28BQ9BUN5 200 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 MMP27Q9H306 513 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 ARHGEF38Q9NXL2 777 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 IL17CQ9P0M4 197 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 PLAGL1Q9UM63 463 aa1.95□□□□□ -2.1
NUP54-208ENST00000508604 IPO8O15397 1037 aaKnown RBP1.94□□□□□ -2.1
NUP54-208ENST00000508604 TLX2O43763 284 aaPredicted RBP1.94□□□□□ -2.1
NUP54-208ENST00000508604 LAMP2P13473 410 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 IRF2P14316 349 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 ALFQ53S48 1182 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 CASC1Q6TDU7 716 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 SLC24A5Q71RS6 500 aa1.94□□□□□ -2.1
NUP54-208ENST00000508604 TMPRSS11BQ86T26 416 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms