RNA–Protein interactions for RNA: ENST00000504807.5

DDX41-204, Transcript of DEAD-box helicase 41, humanhuman

TSL 2

Gene DDX41, Length 794 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-204ENST00000504807 TP73O15350 636 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 LRRTM2O43300 516 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 DPM1O60762 260 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 ZG16O60844 167 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 CELA2AP08217 269 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 SNRPB2P08579 225 aaKnown RBP12.51□□□□□ -0.41
DDX41-204ENST00000504807 ERVK-10P10266 1014 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 MMP11P24347 488 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 IMPA1P29218 277 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 PNLIPRP1P54315 467 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 ARSFP54793 590 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 RRADP55042 308 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 SOX8P57073 446 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 TAP2Q03519 686 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 KLC1Q07866 573 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 DHX9Q08211 1270 aaKnown RBP12.51□□□□□ -0.41
DDX41-204ENST00000504807 SYT16Q17RD7 645 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 HSP90AA5PQ58FG0 334 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 SPNS3Q6ZMD2 512 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 PRSS41Q7RTY9 318 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 CUZD1Q86UP6 607 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 CISD2Q8N5K1 135 aaKnown RBP12.51□□□□□ -0.41
DDX41-204ENST00000504807 AMER3Q8N944 861 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 OR11G2Q8NGC1 345 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 GSDMBQ8TAX9 411 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 ACTRT1Q8TDG2 376 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 PNPLA2Q96AD5 504 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 ZFYVE21Q9BQ24 234 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 MACROD1Q9BQ69 325 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 C17orf62Q9BQA9 187 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 DDX47Q9H0S4 455 aaKnown RBP12.51□□□□□ -0.41
DDX41-204ENST00000504807 WDR54Q9H977 334 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 XAB2Q9HCS7 855 aaKnown RBP12.51□□□□□ -0.41
DDX41-204ENST00000504807 IARS2Q9NSE4 1012 aaKnown RBP12.51□□□□□ -0.41
DDX41-204ENST00000504807 ABCF3Q9NUQ8 709 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 INTS7Q9NVH2 962 aaKnown RBP12.51□□□□□ -0.41
DDX41-204ENST00000504807 CDC23Q9UJX2 597 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 FBXO5Q9UKT4 447 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 IKZF3Q9UKT9 509 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 SNX12Q9UMY4 172 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 DHRS7Q9Y394 339 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 PCDHGB7Q9Y5F8 929 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 MAD1L1Q9Y6D9 718 aa12.51□□□□□ -0.41
DDX41-204ENST00000504807 DIDO1Q9BTC0 2240 aaKnown RBP12.5□□□□□ -0.41
DDX41-204ENST00000504807 CTAGE9A4FU28 777 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 E5RI56 91 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 H3BMM5 538 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 GFYI3L273 518 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 FOXS1O43638 330 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 ALBP02768 609 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 SKIV2L2P42285 1042 aaKnown RBP12.5□□□□□ -0.41
DDX41-204ENST00000504807 CDKN2DP55273 166 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 TSTA3Q13630 321 aaPredicted RBP12.5□□□□□ -0.41
DDX41-204ENST00000504807 CRYMQ14894 314 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 HIF1AQ16665 826 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 LONRF1Q17RB8 773 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 TCTE1Q5JU00 501 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 HP1BP3Q5SSJ5 553 aaPredicted RBP12.5□□□□□ -0.41
DDX41-204ENST00000504807 ICE2Q659A1 982 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 TTC23LQ6PF05 361 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 IGFL3Q6UXB1 125 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 PARP9Q8IXQ6 854 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 PPIL6Q8IXY8 311 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 TTC29Q8NA56 475 aaPredicted RBP12.5□□□□□ -0.41
DDX41-204ENST00000504807 CLEC1AQ8NC01 280 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 STT3BQ8TCJ2 826 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 SMPDL3AQ92484 453 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 KCNJ9Q92806 393 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 FER1L6-AS2Q96M78 137 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 CCDC138Q96M89 665 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 FOPNLQ96NB1 174 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 AARSD1Q9BTE6 412 aaKnown RBP12.5□□□□□ -0.41
DDX41-204ENST00000504807 ZNF304Q9HCX3 659 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 MRPS30Q9NP92 439 aaKnown RBP12.5□□□□□ -0.41
DDX41-204ENST00000504807 SAMD15Q9P1V8 674 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 FAM169AQ9Y6X4 670 aa12.5□□□□□ -0.41
DDX41-204ENST00000504807 IGLV3-12A0A075B6K2 115 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 SMAPO00193 183 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 PEX12O00623 359 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 DNALI1O14645 258 aaPredicted RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 NRDCO43847 1150 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 SRPX2O60687 465 aaPredicted RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 FKBP9O95302 570 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 NADKO95544 446 aaPredicted RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 TSPAN12O95859 305 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 SYF2O95926 243 aaKnown RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 ZGLP1P0C6A0 271 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 MPC1LP0DKB6 136 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 PAMP19021 973 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 CMPK1P30085 196 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 RPA3P35244 121 aaPredicted RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 FNTAP49354 379 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 PER3P56645 1201 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 SARNPP82979 210 aaKnown RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 MAT1AQ00266 395 aaKnown RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 PRDX1Q06830 199 aaKnown RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 THOC5Q13769 683 aaKnown RBP12.49□□□□□ -0.41
DDX41-204ENST00000504807 PHKG1Q16816 387 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 PRAMEF13Q5VWM6 474 aa12.49□□□□□ -0.41
DDX41-204ENST00000504807 TRMT10BQ6PF06 316 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms