RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ZNF284Q2VY69 593 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 PIP5KL1Q5T9C9 394 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 PLAG1Q6DJT9 500 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 OR6B2Q6IFH4 312 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 PPP1R2P3Q6NXS1 205 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 PMF1Q6P1K2 205 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CYB5D1Q6P9G0 228 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 RNF44Q7L0R7 432 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 SLC26A9Q7LBE3 791 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 HPS6Q86YV9 775 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CEP97Q8IW35 865 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 HSCBQ8IWL3 235 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CCAR2Q8N163 923 aaKnown RBP3.86□□□□□ -1.79
USP54-217ENST00000498213 AADATQ8N5Z0 425 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 Q8N9P0 234 aaPredicted RBP3.86□□□□□ -1.79
USP54-217ENST00000498213 FAM71DQ8N9W8 422 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 NT5C3BQ969T7 300 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 SLC35C1Q96A29 364 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 FAM149B1Q96BN6 582 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CENPTQ96BT3 561 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 ALG14Q96F25 216 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 WDYHV1Q96HA8 205 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 SNX22Q96L94 193 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 PRICKLE1Q96MT3 831 aaPredicted RBP3.86□□□□□ -1.79
USP54-217ENST00000498213 SLC25A23Q9BV35 468 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CINPQ9BW66 212 aaPredicted RBP3.86□□□□□ -1.79
USP54-217ENST00000498213 PANK2Q9BZ23 570 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 NUP62CLQ9H1M0 184 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 FZD3Q9NPG1 666 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 RCOR3Q9P2K3 495 aaPredicted RBP3.86□□□□□ -1.79
USP54-217ENST00000498213 VPS28Q9UK41 221 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 RIMKLBQ9ULI2 386 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 MFHAS1Q9Y4C4 1052 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 OR51B4Q9Y5P0 310 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 DGKBQ9Y6T7 804 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 RNF215Q9Y6U7 377 aa3.86□□□□□ -1.79
USP54-217ENST00000498213 CUBNO60494 3623 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 TTC34A8MYJ7 566 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 M0QYV0 167 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 CLIC1O00299 241 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 FCHO1O14526 889 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 ADAM10O14672 748 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 SLC31A1O15431 190 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 THAP12O43422 761 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 POP4O95707 220 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 LY6G6DO95868 133 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 GSRP00390 522 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 MT-ND5P03915 603 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 PYGLP06737 847 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 HSP90AA1P07900 732 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 ANXA6P08133 673 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 HMBSP08397 361 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 TMEM225BP0DP42 221 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 FGF3P11487 239 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 ADRB3P13945 408 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 PFKFB1P16118 471 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 BTF3P20290 206 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 TACR3P29371 465 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 PSMD8P48556 350 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 FMO5P49326 533 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 CXCR3P49682 368 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 SERPINH1P50454 418 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 CCL11P51671 97 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 THOP1P52888 689 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 PMS2P54278 862 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 YBEYP58557 167 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 SNRPD1P62314 119 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 RPS24P62847 133 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 ID2Q02363 134 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 CFHR3Q02985 330 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 CEBPZQ03701 1054 aaKnown RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 CNTN1Q12860 1018 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 PKP1Q13835 747 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 BECN1Q14457 450 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 NR1D2Q14995 579 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 CEBPEQ15744 281 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 ZNF260Q3ZCT1 412 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 ZNF805Q5CZA5 627 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 TMTC4Q5T4D3 741 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 NADSYN1Q6IA69 706 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 SPOPLQ6IQ16 392 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 BRAT1Q6PJG6 821 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 TMEM270Q6UE05 265 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 MACC1Q6ZN28 852 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 Q6ZSR6 202 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 C11orf57Q6ZUT1 292 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 CHST15Q7LFX5 561 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 KDELC2Q7Z4H8 507 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 GKN2Q86XP6 184 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 LGI2Q8N0V4 545 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 SLC22A18ASQ8N1D0 253 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 STK40Q8N2I9 435 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 CARNMT1Q8N4J0 409 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 C9orf106Q8NAJ2 232 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 OR2A12Q8NGT7 310 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 KIAA1524Q8TCG1 905 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 ITLN2Q8WWU7 325 aaPredicted RBP3.85□□□□□ -1.79
USP54-217ENST00000498213 CTHRC1Q96CG8 243 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 IQCDQ96DY2 449 aa3.85□□□□□ -1.79
USP54-217ENST00000498213 C14orf79Q96F83 325 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms