RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 TPD52L3Q96J77 140 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 RAD9AQ99638 391 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CATSPERBQ9H7T0 1116 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 AS3MTQ9HBK9 375 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PLCXD1Q9NUJ7 323 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 MS4A12Q9NXJ0 267 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 NUP50Q9UKX7 468 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CCL27Q9Y4X3 112 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 I3L521 148 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 HAS3O00219 553 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 PLD2O14939 933 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 STX7O15400 261 aaKnown RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 PLA2G10O15496 165 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ARHGEF15O94989 841 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 EPN2O95208 641 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 TSPAN12O95859 305 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 COL6A1P12109 1028 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ALAS2P22557 587 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ASAH1Q13510 395 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF267Q14586 743 aaPredicted RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 SUZ12Q15022 739 aaKnown RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 QPRTQ15274 297 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 C5orf22Q49AR2 442 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 PDE12Q6L8Q7 609 aaKnown RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 GOLGA7Q7Z5G4 137 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 LIX1LQ8IVB5 337 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 MTMR14Q8NCE2 650 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 B3GNT7Q8NFL0 401 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ENKURQ8TC29 256 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 PCNPQ8WW12 178 aaKnown RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 TBC1D20Q96BZ9 403 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 MTFMTQ96DP5 389 aaKnown RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 LINGO1Q96FE5 620 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ZBED3Q96IU2 234 aaPredicted RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 FEVQ99581 238 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 IPPKQ9H8X2 491 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 RWDD3Q9Y3V2 267 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 CLCA3PQ9Y6N3 262 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 TEX51A0A1B0GUA7 166 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 RPP40O75818 363 aaKnown RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 C1QBP02746 253 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF286BP0CG31 522 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF30P17039 623 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 CSTF2P33240 577 aaKnown RBP eCLIP11.35□□□□□ -0.591e-6■■■□□ 19
HDAC4-210ENST00000493582 GGT2P36268 569 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 SOX3P41225 446 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 SOX9P48436 509 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 GPR19Q15760 415 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 SAXO2Q658L1 398 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 SLC27A1Q6PCB7 646 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 KCTD20Q7Z5Y7 419 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 RNF130Q86XS8 419 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 LINC01465Q8N7H1 131 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 EFHBQ8N7U6 833 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 HSH2DQ96JZ2 352 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 AIFM2Q9BRQ8 373 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 CCM2Q9BSQ5 444 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ABCB9Q9NP78 766 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 SERHLQ9NQF3 203 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF226Q9NYT6 803 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 TRMT6Q9UJA5 497 aaKnown RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 TNPO3Q9Y5L0 923 aaKnown RBP11.35□□□□□ -0.59
HDAC4-210ENST00000493582 ALG5Q9Y673 324 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 COMMD10Q9Y6G5 202 aa11.35□□□□□ -0.59
HDAC4-210ENST00000493582 H3BUI4 141 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 WWP2O00308 870 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 TLR5O60602 858 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 HOXB8P17481 243 aaPredicted RBP11.34□□□□□ -0.59
HDAC4-210ENST00000493582 RENBPP51606 427 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 PSPHP78330 225 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 DCAF4L1Q3SXM0 396 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 PDZK1Q5T2W1 519 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 GALNT6Q8NCL4 622 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 MSANTD3Q96H12 275 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 CDKN2AIPNLQ96HQ2 116 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 PPP3R2Q96LZ3 170 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 GFM1Q96RP9 751 aaKnown RBP11.34□□□□□ -0.59
HDAC4-210ENST00000493582 DPH2Q9BQC3 489 aaPredicted RBP11.34□□□□□ -0.59
HDAC4-210ENST00000493582 RERGLQ9H628 205 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 CLMPQ9H6B4 373 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 RLIMQ9NVW2 624 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 EIF3KQ9UBQ5 218 aaKnown RBP11.34□□□□□ -0.59
HDAC4-210ENST00000493582 KLHL21Q9UJP4 597 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 OGDHLQ9ULD0 1010 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF236Q9UL36 1845 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 MCM3APO60318 1980 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 SMIM30A4D0T7 59 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 FABP12A6NFH5 140 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 IQCF5A8MTL0 148 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 FZD9O00144 591 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 TSPAN4O14817 238 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 NDUFS3O75489 264 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 WARSP23381 471 aaKnown RBP11.34□□□□□ -0.59
HDAC4-210ENST00000493582 GPC1P35052 558 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 GDF5P43026 501 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 BRCC3P46736 316 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 SV2CQ496J9 727 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 PLET1Q6UQ28 207 aa11.34□□□□□ -0.59
HDAC4-210ENST00000493582 OR8H3Q8N146 312 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms