RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 CD68P34810 354 aaPredicted RBP12.64□□□□□ -0.39
HDAC3-213ENST00000492506 CHRNA4P43681 627 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 GABRA4P48169 554 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 PRKAA1Q13131 559 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 CALCOCO2Q13137 446 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 HIF1AQ16665 826 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 TEX44Q53QW1 395 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 SIRPB2Q5JXA9 342 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 MLIPQ5VWP3 458 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 MRPL14Q6P1L8 145 aaKnown RBP12.64□□□□□ -0.39
HDAC3-213ENST00000492506 IGFL2Q6UWQ7 119 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 NPNTQ6UXI9 565 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 DET1Q7L5Y6 550 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 ZBED8Q8IZ13 594 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 BBOF1Q8ND07 529 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 ACVR1CQ8NER5 493 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 MPP4Q96JB8 637 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 LINC00615Q96LM1 132 aaPredicted RBP12.64□□□□□ -0.39
HDAC3-213ENST00000492506 BTBD9Q96Q07 612 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 WDR77Q9BQA1 342 aaPredicted RBP12.64□□□□□ -0.39
HDAC3-213ENST00000492506 AP1M1Q9BXS5 423 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 KLHL25Q9H0H3 589 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 FAM60AQ9NP50 221 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.64□□□□□ -0.39
HDAC3-213ENST00000492506 NENFQ9UMX5 172 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 CHMP2BQ9UQN3 213 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 COLEC10Q9Y6Z7 277 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 MTORP42345 2549 aa12.64□□□□□ -0.39
HDAC3-213ENST00000492506 GSAPA4D1B5 854 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 ZNF487B1APH4 448 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 PRSS44E7EML9 344 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 H0Y3Z8 333 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 EPOP01588 193 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 POLBP06746 335 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 CTSBP07858 339 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 STSP08842 583 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 ABHD2P08910 425 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 PTPN3P26045 913 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 NDUFS1P28331 727 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 FOLR3P41439 243 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 TSFMP43897 325 aaKnown RBP12.63□□□□□ -0.39
HDAC3-213ENST00000492506 RPL5P46777 297 aaKnown RBP12.63□□□□□ -0.39
HDAC3-213ENST00000492506 HADHBP55084 474 aaKnown RBP12.63□□□□□ -0.39
HDAC3-213ENST00000492506 WNT3AP56704 352 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 MED21Q13503 144 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 PTPRCAPQ14761 206 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 PDK1Q15118 436 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 TBCCQ15814 346 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 BCL7AQ4VC05 210 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 RHBDD2Q6NTF9 364 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 SCAIQ8N9R8 606 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 PHC3Q8NDX5 983 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 FNDC8Q8TC99 324 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 PPP4R1Q8TF05 950 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 FAR1Q8WVX9 515 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 LCN9Q8WX39 176 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 SLCO2A1Q92959 643 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 PTERQ96BW5 349 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 NSL1Q96IY1 281 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 TEKT5Q96M29 485 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 C17orf62Q9BQA9 187 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 SLC7A5P2Q9GIP4 190 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 SRMSQ9H3Y6 488 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 SSU72Q9NP77 194 aaKnown RBP12.63□□□□□ -0.39
HDAC3-213ENST00000492506 KCNK9Q9NPC2 374 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 ATP13A2Q9NQ11 1180 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 FAM8A1Q9UBU6 413 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 HAO1Q9UJM8 370 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 TRIM33Q9UPN9 1127 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 CDYLQ9Y232 598 aa12.63□□□□□ -0.39
HDAC3-213ENST00000492506 HEATR9A2RTY3 570 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 TMEM247A6NEH6 219 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 TPD52L2O43399 206 aaKnown RBP12.62□□□□□ -0.39
HDAC3-213ENST00000492506 EDF1O60869 148 aaKnown RBP12.62□□□□□ -0.39
HDAC3-213ENST00000492506 HAUS5O94927 633 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 FGGP02679 453 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 ALOX15P16050 662 aaPredicted RBP12.62□□□□□ -0.39
HDAC3-213ENST00000492506 MSH3P20585 1137 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 AKT1P31749 480 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 PLTPP55058 493 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 GSTM4Q03013 218 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 MGAT5Q09328 741 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 RASA2Q15283 850 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 ZIC1Q15915 447 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 PDK4Q16654 411 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 CYP1B1Q16678 543 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 DNAL1Q4LDG9 190 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 ZNF658BQ4V348 819 aaPredicted RBP12.62□□□□□ -0.39
HDAC3-213ENST00000492506 C1orf189Q5VU69 101 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 CFAP206Q8IYR0 622 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 ADGRF3Q8IZF5 1079 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 UBL4BQ8N7F7 174 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 PPP1R14CQ8TAE6 165 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 EPS8L3Q8TE67 593 aaKnown RBP12.62□□□□□ -0.39
HDAC3-213ENST00000492506 C10orf82Q8WW14 230 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 MRGPRX2Q96LB1 330 aa12.62□□□□□ -0.39
HDAC3-213ENST00000492506 MRPS26Q9BYN8 205 aaKnown RBP12.62□□□□□ -0.39
HDAC3-213ENST00000492506 SPRTNQ9H040 489 aaPredicted RBP12.62□□□□□ -0.39
HDAC3-213ENST00000492506 TFB2MQ9H5Q4 396 aaKnown RBP12.62□□□□□ -0.39
HDAC3-213ENST00000492506 OCEL1Q9H607 264 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms