RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 IGSF1Q8N6C5 1336 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 IGLV7-46A0A075B6I9 117 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 IGKV3D-15A0A087WSY6 115 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 A0A1W2PPK0 400 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 ANXA2P2A6NMY6 339 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 FPGTO14772 594 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 KHDRBS3O75525 346 aaKnown RBP4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 ATP6AP2O75787 350 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 MOCS3O95396 460 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 SEC24AO95486 1093 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 QDPRP09417 244 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 STAG3L1P0CL83 205 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 EPORP19235 508 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 CD27P26842 260 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 CAPZA1P52907 286 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 MTCP1P56278 107 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 KRT83P78385 493 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 IRX1P78414 480 aaPredicted RBP4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 RASGEF1BQ0VAM2 473 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 SGCGQ13326 291 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF273Q14593 569 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 C14orf177Q52M58 125 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 LYSMD4Q5XG99 296 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 TRIM65Q6PJ69 517 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 BTN2A1Q7KYR7 527 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 THNSL1Q8IYQ7 743 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF713Q8N859 430 aaPredicted RBP4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 ARL10Q8N8L6 244 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 OR1L3Q8NH93 324 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 MAPK15Q8TD08 544 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 C10orf90Q96M02 699 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 SPATA33Q96N06 139 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 MGME1Q9BQP7 344 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 ST6GALNAC4Q9H4F1 302 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 RNF121Q9H920 327 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 RNF186Q9NXI6 227 aa4.27□□□□□ -1.73
HMGB1P38-201ENST00000490557 A0A087X002 238 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 GTPBP10A4D1E9 387 aaKnown RBP4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 CCDC188H7C350 402 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 PDGFRAP16234 1089 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 SFTPDP35247 375 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 NPY4RP50391 375 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 CACNG1Q06432 222 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 RBBP7Q16576 425 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF74Q16587 644 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 PTGISQ16647 500 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 CTU2Q2VPK5 515 aaKnown RBP4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 KRTAP27-1Q3LI81 207 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 LACTB2Q53H82 288 aaPredicted RBP4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 C6orf136Q5SQH8 315 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZC2HC1BQ5TFG8 222 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 SLC25A47Q6Q0C1 308 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 DNAJB7Q7Z6W7 309 aaPredicted RBP4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 LMNTD2Q8IXW0 634 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF614Q8N883 585 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 SLC26A7Q8TE54 656 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 AZIN2Q96A70 460 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 PYCR2Q96C36 320 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 LINC00479Q96M42 142 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 USP28Q96RU2 1077 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 MCRIP2Q9BUT9 160 aaKnown RBP4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 THAP2Q9H0W7 228 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 SDCBP2Q9H190 292 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 MAN2C1Q9NTJ4 1040 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 PKD2L2Q9NZM6 624 aa4.26□□□□□ -1.73
HMGB1P38-201ENST00000490557 NDUFAF8A1L188 74 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 SNURFLB1AK76 121 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 H0YAE9 185 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 BAG2O95816 211 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 ATP1B1P05026 303 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF883P0CG24 379 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 TRIM49P0CI25 452 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 TRIM49CP0CI26 452 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 GP1BBP13224 206 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 RPL35AP18077 110 aaKnown RBP4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 HOXC13P31276 330 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 MMP12P39900 470 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 TSFMP43897 325 aaKnown RBP4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 VEGFCP49767 419 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 HILS1P60008 231 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 TRIM29Q14134 588 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 UGCGQ16739 394 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 FGD3Q5JSP0 725 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 STXBP4Q6ZWJ1 553 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 FCRLAQ7L513 359 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 DCLK2Q8N568 766 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 Q8NFD4 153 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 APOBEC4Q8WW27 367 aaKnown RBP4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 SEPT1Q8WYJ6 367 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 SPATA17Q96L03 361 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 BTBD9Q96Q07 612 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 MRPL9Q9BYD2 267 aaKnown RBP4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 ARGLU1Q9NWB6 273 aaPredicted RBP4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 ERAP1Q9NZ08 941 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 GIMAP2Q9UG22 337 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 ANGPTL3Q9Y5C1 460 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 SELENOKQ9Y6D0 94 aa4.25□□□□□ -1.73
HMGB1P38-201ENST00000490557 TRIM64A6NGJ6 449 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 TRIM64BA6NI03 449 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 TEX28O15482 410 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms