RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 KREMEN2Q8NCW0 462 aa17.15■□□□□ 0.34
NPHP4-209ENST00000489180 SMPDL3BQ92485 455 aa17.15■□□□□ 0.34
NPHP4-209ENST00000489180 ZNF599Q96NL3 588 aa17.15■□□□□ 0.34
NPHP4-209ENST00000489180 TNFRSF10DQ9UBN6 386 aa17.15■□□□□ 0.34
NPHP4-209ENST00000489180 RGS17Q9UGC6 210 aaPredicted RBP17.15■□□□□ 0.34
NPHP4-209ENST00000489180 LDOC1O95751 146 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 SPIN4Q56A73 249 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ZNF782Q6ZMW2 699 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 CILP2Q8IUL8 1156 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 MCEMP1Q8IX19 187 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 C2orf15Q8WU43 125 aaKnown RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 SIGLEC10Q96LC7 697 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 HERC2P3Q9BVR0 1158 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 SLC6A15Q9H2J7 730 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ELOA3DA6NLF2 546 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 NDUFS4O43181 175 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ERI3O43414 337 aaKnown RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ATP1B2P14415 290 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ARHGAP1Q07960 439 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 PAFAH1B3Q15102 231 aaKnown RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ELOA3BQ3SY89 546 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ELOA3Q8NG57 546 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 SOX17Q9H6I2 414 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 RHPN2P1A8MT19 583 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 CCRL2O00421 344 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 HTRA2O43464 458 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 TLX2O43763 284 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 RENP00797 406 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 CD2P06729 351 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 CDK6Q00534 326 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 DEFA5Q01523 94 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ZNF678Q5SXM1 525 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ADGRF1Q5T601 910 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 C1orf216Q8TAB5 229 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 UCK2Q9BZX2 261 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 MAU2Q9Y6X3 613 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 TCHHQ07283 1943 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 A8MUA0 341 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 LDB2O43679 373 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ZNF3P17036 446 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 SLC15A1P46059 708 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 OR12D2P58182 307 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ZNF517Q6ZMY9 492 aaPredicted RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 TIFABQ6ZNK6 161 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 PHC3Q8NDX5 983 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 NSUN3Q9H649 340 aaKnown RBP17.14■□□□□ 0.33
NPHP4-209ENST00000489180 COPS7AQ9UBW8 275 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ZNF639Q9UID6 485 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 PLAGL1Q9UM63 463 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 LRRC42Q9Y546 428 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 ST14Q9Y5Y6 855 aa17.14■□□□□ 0.33
NPHP4-209ENST00000489180 CDKL1Q00532 357 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 PDCD4Q53EL6 469 aaKnown RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 CEACAM20Q6UY09 585 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 SNX29P2Q8IUI4 249 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 TMEM145Q8NBT3 493 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 OR2AJ1Q8NGZ0 328 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 DDX1Q92499 740 aaKnown RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 LRCH3Q96II8 777 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 CCDC106Q9BWC9 280 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 UTS2RQ9UKP6 389 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 SH3D21A4FU49 640 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 OR2AT4A6NND4 320 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 A8MV72 311 aaPredicted RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 TYROBPO43914 113 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 PIGFQ07326 219 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 GDF6Q6KF10 455 aaPredicted RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 DNAJB7Q7Z6W7 309 aaPredicted RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 PROKR2Q8NFJ6 384 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 CEP76Q8TAP6 659 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 RGMAQ96B86 450 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 SLC38A3Q99624 504 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 CCM2Q9BSQ5 444 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 PNO1Q9NRX1 252 aaKnown RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 SLIT2O94813 1529 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 KIF1AQ12756 1690 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 FAM170BA6NMN3 283 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 J3QLW9 94 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 C8orf89P0DMQ9 161 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 ZNF19P17023 458 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 CSNK2A2P19784 350 aaPredicted RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 RPL6Q02878 288 aaKnown RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 MPP2Q14168 576 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 PRAMEF17Q5VTA0 474 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 NRSN1Q8IZ57 195 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 MED11Q9P086 117 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 C2orf92A0A1B0GVN3 265 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 A0A1W2PRQ8 180 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 CNTN5O94779 1100 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 PGAM2P15259 253 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 HK1P19367 917 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 TMEM44Q2T9K0 475 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 SPRYD7Q5W111 196 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 Q6ZVU0 165 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 NUP54Q7Z3B4 507 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 TXNDC5Q8NBS9 432 aaKnown RBP17.13■□□□□ 0.33
NPHP4-209ENST00000489180 TTYH2Q9BSA4 534 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 WACQ9BTA9 647 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 DERL2Q9GZP9 239 aa17.13■□□□□ 0.33
NPHP4-209ENST00000489180 DNAJC27Q9NZQ0 273 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms