RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 ZIM2Q9NZV7 527 aa12.28□□□□□ -0.44
NELFE-209ENST00000488426 CA5BQ9Y2D0 317 aa12.28□□□□□ -0.44
NELFE-209ENST00000488426 LRP4O75096 1905 aa12.28□□□□□ -0.44
NELFE-209ENST00000488426 MAP1BP46821 2468 aaKnown RBP12.27□□□□□ -0.44
NELFE-209ENST00000488426 AIM2O14862 343 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 PDYNP01213 254 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 CD1EP15812 388 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 NPPBP16860 134 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 CD22P20273 847 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 RPL10P27635 214 aaKnown RBP12.27□□□□□ -0.44
NELFE-209ENST00000488426 CSNK1EP49674 416 aaKnown RBP12.27□□□□□ -0.44
NELFE-209ENST00000488426 CSTF3Q12996 717 aaKnown RBP12.27□□□□□ -0.44
NELFE-209ENST00000488426 SGO1Q5FBB7 561 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 PAOXQ6QHF9 649 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 LCTLQ6UWM7 567 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 WASH2PQ6VEQ5 465 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 SLCO4C1Q6ZQN7 724 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 ZFAND4Q86XD8 727 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 FUNDC1Q8IVP5 155 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 FAM174AQ8TBP5 190 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 SNX19Q92543 992 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 PDXPQ96GD0 296 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 CAMK1GQ96NX5 476 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 INSM2Q96T92 566 aaPredicted RBP12.27□□□□□ -0.44
NELFE-209ENST00000488426 HAUS8Q9BT25 410 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 THTPAQ9BU02 230 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 EFCAB11Q9BUY7 163 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 RAB11FIP5Q9BXF6 653 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 ACPTQ9BZG2 426 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 PCED1AQ9H1Q7 454 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 MVB12BQ9H7P6 319 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 LRTM1Q9HBL6 345 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 WASH6PQ9NQA3 447 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 C1orf109Q9NX04 203 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 WDR37Q9Y2I8 494 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 TDRKHQ9Y2W6 561 aaKnown RBP12.27□□□□□ -0.44
NELFE-209ENST00000488426 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.27□□□□□ -0.44
NELFE-209ENST00000488426 PCDHGA11Q9Y5H2 935 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 HEBP2Q9Y5Z4 205 aa12.27□□□□□ -0.44
NELFE-209ENST00000488426 LAMA5O15230 3695 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 HSD3B1P14060 373 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 HSD3B2P26439 372 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 HOXD12P35452 270 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 NOVA1P51513 510 aaKnown RBP12.27□□□□□ -0.45
NELFE-209ENST00000488426 ART3Q13508 389 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 COQ5Q5HYK3 327 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 WDR45BQ5MNZ6 344 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 WASHC2DQ5SRD0 308 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 PRAMEF14Q5SWL7 426 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 PRAMEF13Q5VWM6 474 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 FBXW10Q5XX13 1052 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 ATG9BQ674R7 924 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 SCUBE1Q8IWY4 988 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 ULK2Q8IYT8 1036 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 DSELQ8IZU8 1212 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 PGAM4Q8N0Y7 254 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 OR9I1Q8NGQ6 314 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 CEP76Q8TAP6 659 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 WDR20Q8TBZ3 569 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 NEIL2Q969S2 332 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 REPS1Q96D71 796 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 FERD3LQ96RJ6 166 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 MENTQ9BUN1 341 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 C1orf50Q9BV19 199 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 PCBD2Q9H0N5 130 aa12.27□□□□□ -0.45
NELFE-209ENST00000488426 PRPF19Q9UMS4 504 aaKnown RBP12.27□□□□□ -0.45
NELFE-209ENST00000488426 EIF3LQ9Y262 564 aaKnown RBP12.27□□□□□ -0.45
NELFE-209ENST00000488426 CFAP20Q9Y6A4 193 aaKnown RBP12.27□□□□□ -0.45
NELFE-209ENST00000488426 FREM2Q5SZK8 3169 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 DYTNA2CJ06 578 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 PDZK1P1A8MUH7 402 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 NRP2O60462 931 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 SLC22A3O75751 556 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 C1GALT1C1LP0DN25 315 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 CD59P13987 128 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 SLC2A4P14672 509 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 ACPPP15309 386 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 SRP54P61011 504 aaKnown RBP12.26□□□□□ -0.45
NELFE-209ENST00000488426 RPL38P63173 70 aaKnown RBP12.26□□□□□ -0.45
NELFE-209ENST00000488426 HMGCS1Q01581 520 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 PRKG2Q13237 762 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 LAPTM5Q13571 262 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 RCAN2Q14206 197 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 MMEL1Q495T6 779 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 RFTN2Q52LD8 501 aaPredicted RBP12.26□□□□□ -0.45
NELFE-209ENST00000488426 PAGE2BQ5JRK9 111 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 TPRG1LQ5T0D9 272 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 IL23RQ5VWK5 629 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 REP15Q6BDI9 236 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 BLOC1S3Q6QNY0 202 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 ABRAXAS1Q6UWZ7 409 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 HACD2Q6Y1H2 254 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 Q6ZSR6 202 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 TMPRSS11BQ86T26 416 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 DEFB107AQ8IZN7 70 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 SLC5A11Q8WWX8 675 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 SMPDL3AQ92484 453 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 CMTM7Q96FZ5 175 aa12.26□□□□□ -0.45
NELFE-209ENST00000488426 METTL2AQ96IZ6 378 aaKnown RBP12.26□□□□□ -0.45
NELFE-209ENST00000488426 CNTNAP3BQ96NU0 1288 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms