RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 TIAF1O95411 115 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 NUDT17P0C025 328 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 NCF1P14598 390 aaPredicted RBP14.02□□□□□ -0.17
LIMS3-205ENST00000487150 NPPBP16860 134 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 ZNF28P17035 718 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 CXCR2P25025 360 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 HPDP32754 393 aaPredicted RBP14.02□□□□□ -0.17
LIMS3-205ENST00000487150 PIK3CGP48736 1102 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 RPS15P62841 145 aaKnown RBP14.02□□□□□ -0.17
LIMS3-205ENST00000487150 IFFO1Q0D2I5 559 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 OR4D1Q15615 310 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 NDUFA9Q16795 377 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 ERCC6LQ2NKX8 1250 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 MUM1Q2TAK8 710 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 THOC6Q86W42 341 aaKnown RBP14.02□□□□□ -0.17
LIMS3-205ENST00000487150 CSNK1A1LQ8N752 337 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 TTLQ8NG68 377 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 UBTD2Q8WUN7 234 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 PYCR2Q96C36 320 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 NXNL1Q96CM4 212 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 MVB12AQ96EY5 273 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 SEC16BQ96JE7 1060 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 AIF1LQ9BQI0 150 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 EPB41L4BQ9H329 900 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 EHD1Q9H4M9 534 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 IKZF3Q9UKT9 509 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 RAB21Q9UL25 225 aa14.02□□□□□ -0.17
LIMS3-205ENST00000487150 TNPO3Q9Y5L0 923 aaKnown RBP14.02□□□□□ -0.17
LIMS3-205ENST00000487150 AHCTF1Q8WYP5 2266 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 IGKV1-8A0A0C4DH67 115 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 ZNF891A8MT65 544 aaPredicted RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 H3BMH7 237 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 H7BY64 318 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 ERLIN1O75477 346 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 NTRK1P04629 796 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 SLC35G6P0C7Q6 338 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 CDH1P12830 882 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 GFAPP14136 432 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 RORAP35398 523 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 HSD17B3P37058 310 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 SLC6A12P48065 614 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 VSX2P58304 361 aaPredicted RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 SKP1P63208 163 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 VAC14Q08AM6 782 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 CDC16Q13042 620 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 TGIF1Q15583 401 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 PDK4Q16654 411 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 CRTC2Q53ET0 693 aaPredicted RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 NIPAL1Q6NVV3 410 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 PRMT9Q6P2P2 845 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 ZNF517Q6ZMY9 492 aaPredicted RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 TMPRSS11BQ86T26 416 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 DSELQ8IZU8 1212 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 MREGQ8N565 214 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 CAMKVQ8NCB2 501 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 SNRNP27Q8WVK2 155 aaKnown RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 EXT2Q93063 718 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 MR1Q95460 341 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 SLC45A3Q96JT2 553 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 PRAP1Q96NZ9 151 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 ATOH8Q96SQ7 321 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 MRPL57Q9BQC6 102 aaKnown RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 SARGQ9BW04 601 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 PARD6BQ9BYG5 372 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 UNKQ9C0B0 810 aaKnown RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 PCMTD2Q9NV79 361 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 DNAJC11Q9NVH1 559 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 CUEDC1Q9NWM3 386 aaPredicted RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 PTBP2Q9UKA9 531 aaKnown RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 CROTQ9UKG9 612 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 CDC14AQ9UNH5 594 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 SLC22A14Q9Y267 594 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 PCDHGA6Q9Y5G7 932 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 V9GYY5 206 aaPredicted RBP14.01□□□□□ -0.17
LIMS3-205ENST00000487150 AKAP13Q12802 2813 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 WDFY3Q8IZQ1 3526 aa14.01□□□□□ -0.17
LIMS3-205ENST00000487150 TRBC2A0A5B9 178 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 K7ENP7 123 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 HAT1O14929 419 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 CLGNO14967 610 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 DSCR3O14972 297 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 SMIM24O75264 130 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 H2AFYO75367 372 aaKnown RBP14□□□□□ -0.17
LIMS3-205ENST00000487150 KATNA1O75449 491 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 RECKO95980 971 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 GSTA1P08263 222 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 RAB40ALP0C0E4 278 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 KRT15P19012 456 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 DLSTP36957 453 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 ALDH18A1P54886 795 aaKnown RBP14□□□□□ -0.17
LIMS3-205ENST00000487150 CSNK1G2P78368 415 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 DCDP81605 110 aaKnown RBP14□□□□□ -0.17
LIMS3-205ENST00000487150 IRF9Q00978 393 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 DLG1Q12959 904 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 PAGE2BQ5JRK9 111 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 WASHC2DQ5SRD0 308 aa14□□□□□ -0.17
LIMS3-205ENST00000487150 INO80CQ6PI98 192 aaPredicted RBP14□□□□□ -0.17
LIMS3-205ENST00000487150 TIPARPQ7Z3E1 657 aaKnown RBP14□□□□□ -0.17
LIMS3-205ENST00000487150 SPNS2Q8IVW8 549 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms