RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 PET117Q6UWS5 81 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 LIPIQ6XZB0 460 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 KIAA1328Q86T90 577 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 MOGAT3Q86VF5 341 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 SLC47A2Q86VL8 602 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 NRROSQ86YC3 692 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 MCEMP1Q8IX19 187 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 NAGSQ8N159 534 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 MIER2Q8N344 545 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 BMPERQ8N8U9 685 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 ZNF565Q8N9K5 539 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 CCDC63Q8NA47 563 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 Q8NFD4 153 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 SLC22A8Q8TCC7 542 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 CPT1CQ8TCG5 803 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 ZNF483Q8TF39 744 aaPredicted RBP6.62□□□□□ -1.35
HDAC3-209ENST00000486618 LRTOMTQ8WZ04 291 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 SLC35B4Q969S0 331 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 C1GALT1C1Q96EU7 318 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 TEKT5Q96M29 485 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 LGR4Q9BXB1 951 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 PACSIN1Q9BY11 444 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 KRTAP9-9Q9BYP9 154 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 KRTAP9-4Q9BYQ2 154 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 ATP13A3Q9H7F0 1226 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 KCND1Q9NSA2 647 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 C14orf119Q9NWQ9 140 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 LHX3Q9UBR4 397 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 TMEM59LQ9UK28 342 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 DNAJC12Q9UKB3 198 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 CORO2BQ9UQ03 480 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 SNX13Q9Y5W8 968 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 COMMD3-BMI1R4GMX3 469 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 RELNP78509 3460 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 SHANK1Q9Y566 2161 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 POLQO75417 2590 aa6.62□□□□□ -1.35
HDAC3-209ENST00000486618 NBPF19A0A087WUL8 3843 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 A1L4Q6 167 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 SLC9B1P1A6NJY1 282 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 A8MU76 341 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 ZNF879B4DU55 563 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FAM72CH0Y354 149 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 POLR1CO15160 346 aaPredicted RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 PHF2O75151 1096 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 ATP6V1G1O75348 118 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CRTAMO95727 393 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 LSM8O95777 96 aaKnown RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CBX7O95931 251 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 GAAP10253 952 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 NR1D1P20393 614 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 MCM3P25205 808 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 AK4P27144 223 aaPredicted RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 EPHB2P29323 1055 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CSF2RBP32927 897 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 EVI2BP34910 448 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 DLSTP36957 453 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 MAGEA4P43358 317 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 GNPDA1P46926 289 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FASLGP48023 281 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 ARCN1P48444 511 aaKnown RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 LUMP51884 338 aaPredicted RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 STX17P56962 302 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 RIPPLY3P57055 190 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CLCQ05315 142 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 BCL2L1Q07817 233 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 PAK1Q13153 545 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 MPP2Q14168 576 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 ACAP2Q15057 778 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CYTH1Q15438 398 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CDO1Q16878 200 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 ATP1A1-AS1Q5TC04 95 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FAM72AQ5TYM5 149 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 YOD1Q5VVQ6 348 aaPredicted RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CES4AQ5XG92 561 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FAM72DQ6L9T8 149 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 SLC2A7Q6PXP3 512 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 WDR74Q6RFH5 385 aaPredicted RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 KLHL24Q6TFL4 600 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 DPPA4Q7L190 304 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 STRADAQ7RTN6 431 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 TIPARPQ7Z3E1 657 aaKnown RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 ARHGAP22Q7Z5H3 698 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FGD2Q7Z6J4 655 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 THAP5Q7Z6K1 395 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FAM72BQ86X60 149 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CAMK1DQ8IU85 385 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FAM71AQ8IYT1 594 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 RTL3Q8N8U3 475 aaKnown RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 NETO2Q8NC67 525 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FAM81AQ8TBF8 368 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 PATE1Q8WXA2 126 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 ST8SIA4Q92187 359 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 SNF8Q96H20 258 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 ZNF764Q96H86 408 aaPredicted RBP6.61□□□□□ -1.35
HDAC3-209ENST00000486618 KCNC2Q96PR1 638 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 SLC38A3Q99624 504 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 CTRCQ99895 268 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 FAM118BQ9BPY3 351 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 TEX101Q9BY14 249 aa6.61□□□□□ -1.35
HDAC3-209ENST00000486618 SLC29A3Q9BZD2 475 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms